From 8d8e15205dbdd76d4574085e5321de1070e67b33 Mon Sep 17 00:00:00 2001 From: Fudgerboy <91767657+Fudgerboy@users.noreply.github.com> Date: Sat, 4 May 2024 23:35:43 +0000 Subject: Sat, May 4, 2024, 4:35 PM -07:00 --- wk6/pset/dna/dna.py | 58 +++++++++++++++++++++++++++++++++++++++++++ wk6/pset/dna/sequences/1.txt | 1 + wk6/pset/dna/sequences/10.txt | 1 + wk6/pset/dna/sequences/11.txt | 1 + wk6/pset/dna/sequences/12.txt | 1 + wk6/pset/dna/sequences/13.txt | 1 + wk6/pset/dna/sequences/14.txt | 1 + wk6/pset/dna/sequences/15.txt | 1 + wk6/pset/dna/sequences/16.txt | 1 + wk6/pset/dna/sequences/17.txt | 1 + wk6/pset/dna/sequences/18.txt | 1 + wk6/pset/dna/sequences/19.txt | 1 + wk6/pset/dna/sequences/2.txt | 1 + wk6/pset/dna/sequences/20.txt | 1 + wk6/pset/dna/sequences/3.txt | 1 + wk6/pset/dna/sequences/4.txt | 1 + wk6/pset/dna/sequences/5.txt | 1 + wk6/pset/dna/sequences/6.txt | 1 + wk6/pset/dna/sequences/7.txt | 1 + wk6/pset/dna/sequences/8.txt | 1 + wk6/pset/dna/sequences/9.txt | 1 + 21 files changed, 78 insertions(+) create mode 100644 wk6/pset/dna/dna.py create mode 100644 wk6/pset/dna/sequences/1.txt create mode 100644 wk6/pset/dna/sequences/10.txt create mode 100644 wk6/pset/dna/sequences/11.txt create mode 100644 wk6/pset/dna/sequences/12.txt create mode 100644 wk6/pset/dna/sequences/13.txt create mode 100644 wk6/pset/dna/sequences/14.txt create mode 100644 wk6/pset/dna/sequences/15.txt create mode 100644 wk6/pset/dna/sequences/16.txt create mode 100644 wk6/pset/dna/sequences/17.txt create mode 100644 wk6/pset/dna/sequences/18.txt create mode 100644 wk6/pset/dna/sequences/19.txt create mode 100644 wk6/pset/dna/sequences/2.txt create mode 100644 wk6/pset/dna/sequences/20.txt create mode 100644 wk6/pset/dna/sequences/3.txt create mode 100644 wk6/pset/dna/sequences/4.txt create mode 100644 wk6/pset/dna/sequences/5.txt create mode 100644 wk6/pset/dna/sequences/6.txt create mode 100644 wk6/pset/dna/sequences/7.txt create mode 100644 wk6/pset/dna/sequences/8.txt create mode 100644 wk6/pset/dna/sequences/9.txt diff --git a/wk6/pset/dna/dna.py b/wk6/pset/dna/dna.py new file mode 100644 index 0000000..401e674 --- /dev/null +++ b/wk6/pset/dna/dna.py @@ -0,0 +1,58 @@ +import csv +import sys + + +def main(): + + # TODO: Check for command-line usage + + # TODO: Read database file into a variable + + # TODO: Read DNA sequence file into a variable + + # TODO: Find longest match of each STR in DNA sequence + + # TODO: Check database for matching profiles + + return + + +def longest_match(sequence, subsequence): + """Returns length of longest run of subsequence in sequence.""" + + # Initialize variables + longest_run = 0 + subsequence_length = len(subsequence) + sequence_length = len(sequence) + + # Check each character in sequence for most consecutive runs of subsequence + for i in range(sequence_length): + + # Initialize count of consecutive runs + count = 0 + + # Check for a subsequence match in a "substring" (a subset of characters) within sequence + # If a match, move substring to next potential match in sequence + # Continue moving substring and checking for matches until out of consecutive matches + while True: + + # Adjust substring start and end + start = i + count * subsequence_length + end = start + subsequence_length + + # If there is a match in the substring + if sequence[start:end] == subsequence: + count += 1 + + # If there is no match in the substring + else: + break + + # Update most consecutive matches found + longest_run = max(longest_run, count) + + # After checking for runs at each character in seqeuence, return longest run found + return longest_run + + +main() diff --git a/wk6/pset/dna/sequences/1.txt b/wk6/pset/dna/sequences/1.txt new file mode 100644 index 0000000..d9b0e48 --- /dev/null +++ b/wk6/pset/dna/sequences/1.txt @@ -0,0 +1 @@ +AAGGTAAGTTTAGAATATAAAAGGTGAGTTAAATAGAATAGGTTAAAATTAAAGGAGATCAGATCAGATCAGATCTATCTATCTATCTATCTATCAGAAAAGAGTAAATAGTTAAAGAGTAAGATATTGAATTAATGGAAAATATTGTTGGGGAAAGGAGGGATAGAAGG diff --git a/wk6/pset/dna/sequences/10.txt b/wk6/pset/dna/sequences/10.txt new file mode 100644 index 0000000..c0ae90d --- /dev/null +++ b/wk6/pset/dna/sequences/10.txt @@ -0,0 +1 @@ +TCTAGTCTAGTCTAGTCTAGTCTAGACTTGTCGCTGACTCCGAGAAGATCCTAACATTAACCAATTCCCCCTAGTCTGAGGCACGGTTACCGATCGGGTTAATGGATCTCTCACCGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAACGTGTAACTGTAATAATCCGCCCGAAAAAACTGATCTTAGGGTTGCGGCATCTGCACGTGACAGTGTGCTACTGTTAGATAGAGGGATCAAACGAGGTTGCAAGGATTATATCTCTCCGTGCTCGATAAGACACAGCCGGTTGCGGGCTGCTTCCTCTGGATCCAATGCAGCCGTACGTACACCGTAGAGCAAATTTAGTGGTAAAGGAACTTGCTCAAACACTACGGCTTCGGGCTACTGTTGGCGCCGGTTGGGGATCCCATTCAACGCTGGCCCTTTCGCTATGGTTCGGTGATTTTACACCGAAGCGAACCTTGAACCGTGGATTTCGGGTGTCCTCCGTTTTTAGGTACTGCGTGCAGACATGGGCACCTGCCATAGTGCGATCAGCCAGAATCCATTGTATGGGAGTTGGACTCGTTTGAATTTACCGGAAACCTCATGCTTGGTCTGTAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGAAACTGGGCGACTTGAAGTCGGCTTGCGTATTAATAGCTCTGCAATGTAACTCGGCCCTTGGCGGCGGGCAGCTTAGTATTGAACCGCGACACACCATAGGTGCGGCAAATATTAAAAGTACGCTCGAACCGGAACCTGTCTCCATGACTGGACGACCAGCCCGGCGTCTTCTACGTAACACAGGGGGCTGTCGAGGTAGGGCGTAGGAACTTCGGGGTCACTACGCCGTAACAGCACCGAATATCATATCATCCAACTTGCTTGGTACATGCCCCGTTCTGTATCAAAAGTTTACGGCCCCGGACATACCTGCTGTCAGTTGAATACCTATGCGAGTCTGAAACACGAATAGTTCAGGCGTGCAAAGACACGCTAAGCACACGCCGCAGGCAGGGGGGGTATTTTATAAGTCGTTTTTTGGAAGGGTAATGTAAACTTATCCCATAATACCCTTTGGCTTCCCCTCACTCGTGCACTTCTCATAATGATACGTCAGGGTGATTGTAGATTCACGCGTCATCAGATTGTCCCTTTCTCGAGTCTTAGTATCTTTCCTAATCCGCTCGACTCTGCGCCATGATCGAATTCCTGACAGGCTACAAGAATAAACTGCCAGCATACTCCTTACCGATTGGCGCCTACTAATTATACGCACATGGGCATCTTCGACGTCTAAACATAGGCTCTTAGTATTCCGTAGGATGTTGAGCCGACAGGAAAGTCAAACGTCGTGGGTGACCGTAGCCTGACTCGCCCGACGCAGGATTCGCTCATATGTGTGAACGGATGCTTATGTAACTTCCTAATTGCAGCGAATGGCAGTTCCGTAGTGAAGGTTCGAAACGTACGGGGTCCGGCCATGGATTAGATCTTTCAGTGCGCTAAACTCTTAACCGCAGATACTTGGCGGACCATCTTCGTGTTGCTACTATGGTATAGACCAGGCTGTCGAATCTACTTAACACAGGTGAACCCCCAGATCGGCTAGAGCCTTCGAGGCTAGACCTTTAACAATCTTTAGACACTTCCAAATCGCGGCCGGATATGTCTCGTTGGCAGCCGCAGACAAGAGAAGAGGGTCGGCAGTGTCTGCCACGCGTGACCTGTATGATCTTAGCCTTTAAGATCACACTACTGATCACAATCTATTATGATTGCCTTAGCTAACTGAGTGATGCACCCCCACAGGCTGAGAGAAATCTGTAGTTTGACGACACGCCGTCTGGCTAAAAATGTGAATCCGCCGATCCGAGACGGTGGAAGCTTGAGACCAAATGCGGGAAACCAATGACTTCATTACGGAACAAGACATAACGGCGTGAGTTGACGACTGGGATTAACCCTTTCCCGAGTCTGTACTTCTGCTACACAATGAGGATGCGAATTATCTAAGACCTTGTACTACCTAAACTAACCCTGAGGCGGGCATTGAATTCCGGCCATCTTCAGCCCAAAGAAAGACCAAATGTGAGGAAAATGAGGGATCGGTATAAGCTTTTCACGATCTCAAGGTTCACGGCCGCCAGGGCCGTAGTTGGGGCTTCATGCACATTGCCAACCCGGACATCGACAGTCGGTACCGCAGGGGTTCGAGGAATACTCCCAGCTGTGACACCTGGTCGTCGACTGGACCCAGCTGGTGGGCGGCATAGGTAGTTAATACTGAATTAAAGCCGGGAACGTCTCTCTAACTAGAAACCTTGTGATAGGATACACAGACCTAGTGCCCCGACGTTAGCATTTGAATTCATCTATCTTGGCGTCTTTTAGTAGGCCTGGGTCAACTCCGGCGTTGGCCAAAATAACCGATCTGCGTTATGTGGCCACGCATCGAGTGACAGGGTGCATACAAATTGATGGTCAAAGAGTTTAAACAAGACAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCCCCACGCTTCTACATAGCCACACTGGAGCTAGTCCTCGTGTTAAATTTTTCGCTTGTTGCACGGTTATCATCAGAAGTGCCACTGGTATTCCTCTGTAGCTCCCGTATGCCGAAGGTTGCGGCTTAGGTACTGCTTATACACGTCTCTCAAGTTTGTCAGCCGCGTGATCTTTCTGCGGGGATAGGTGATCGTCCCTCGCTCCGGACATTGCATTAAAATTACCTAGTTGATAGGGCGGCGGAGTTGCATACCGGCGTTCAATCGCGGCTCCAGACTGGTTTGAGCTACGCGTCTGCCAGCGTGAAAAAGCTGATTTGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCAGGTATTATCATTTGAATCGTATGTTTTCTGCCGTACGTCAACTGCGTCGTCGGGGACTGAAATGGTCTGCCTCCAGACCCTTACCTCCCGATAAGCCATGACTAAGTATGTGAAGGATCACCTGAATTGCTGAAAGTTAACGGTAAGATATCTGAAAGAGCTCATTAGATCCAACACTTATCTACTCAAAAATTCGTCATATTTCGGTGACTTGCTAGAAAGGCTCTTGCACAGTAAGGTTATAGAGAATGCTACCGTTGAAGCACCAGCCGTTGAAGCCCGCCTTTAACCACGCGATATATCCAATTAACCAAGGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTCGCCTTGTAATAATTACTTTGGCCCGGATTATAACGAAGGAACTCGCCATGAACTCGCAGCACGTTGTACTGGAACAATCTACTTTTTATAATATAGCGATAACTCCCAGCTTTTATGTGGGTGATATTGTCCTAGCTTTTTAAAGATACCCTCTGGCCCGGTCCAAGTAAGGTCCACATTGCCTGACGTAAGCGTACGGTCAACGGGTGCACCGGTTCCCGCTAAAGCTCGATCCTATTCTTTCAGTCGGGGGGAAATAAACTCGTATACTCTCCACCCACCCGTACGTCCCGGACTAGAATAACTACCGGGTATTTCCGGTTCGTAACACCACGCCATGACGTGTCAACATAAACGCTTCTTTTGAAAGGTGCACATGCAGATTGCACAAGCAGCAGGCACCGCCCTTATCCATATCCTGTTGAGGCCCTCGATCCTAGTGTTCCTTGTTATCAGGATATTTTCTCGCTGTACGTTATTGTCCTTTTCAAATTACAACTGACCGCTTCCTCACCCGCTAAACCCTACCTTACGCACAACCAAGGCCTTGTCCCGGATGAACCCGGCTGCTCCTATGGATAAGCAACCCAGCCCGGCAGTTTACTTCAGGTGTTATCGTCGACTGACACCCTCAGCTTTCTCCCATTACACAGCGAGTATTTTCCGCGTAGCAATGGCAGTGACTTTGAGCGCACACTCAGAAGCCGTTGGAATGGCACCGGGGACGGCCCGATTTAGCCCCGCACACCTCCTGGAATCTTAGATCGCACGGCGATCTCGGTTCAGGCACCAACCCCAAAGAGTGTTTTGAGTTTTTGGTATGGCTCGCCTCAATTATCGGTTTTCGCTGCTCTGTGCCTGTCAACTCGGCTAGCTGTCGTGTTTTGTCGATCAGTGCGTGGACACTCTCGGTCGATGGTCGTGGATGGGACTGTAGTAAGTTTCACCGAAGCAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACTTCGCTTCATATAACGTAGCCATAGTGCTGTCTGCCATCAATAAGTCTTGCTCAGTGGTGCATACGTCGGGGAGGTTTGTTCCGCCTGGTCAGAACGAGTCTAGGGCGAGCCTATAGGCCAGTCGAGAGCCAAGATTCTATGAAATTAATACGACTACTGGGTGAGAGGTCATACAATTCCCGTGGAATCTGTACCTAAGATATTTCCAGATAGGGATGGCTACTGGTTAAGTTGACAGTGTCTAGATACGTGAGAGCACCTGAGAGGACGCCACGAGTCGGAGCGTGGGCGATCACCCTTCTGAGTCATAAGTCATGTCTATATATCCCTCACTAAAAAGGGCACACGACTATACATGCTTGAGCTTTACGGTCTGGCATGTGGAATGCCCGGAGCAACCCAGTCTTACCATCCTTTACGTACATTTACCGACCCGGCAGTGGCCGGCGCGGAAACCCAGGAGAACGTCGGTCATGATACGCGCCCTCCGCCGAAAGCGTGCTCACACCTCAGGATATCAGCGCTATTACCGGACGTCCCGCGTCCACCATCTAATAATTCAGGTGCTCCTAATAAGTGGGCTGGAGAGCGAGGATTGATATACGTTGAGGAGCTCCGACGGCCCTCTCGTGCGTTTGATGTAGATTGCGTTACCGACGGAGCACGCGTTTGTCAATTTCTGTCTAGGGACGTTTATGTCCTCAATACGAATACCAGGCCTATTTTAGTGTACAAATCACTTAGCAGTCGGAATTGGAAACCTGATGGAAGCGT \ No newline at end of file diff --git a/wk6/pset/dna/sequences/11.txt b/wk6/pset/dna/sequences/11.txt new file mode 100644 index 0000000..a1a0763 --- /dev/null +++ b/wk6/pset/dna/sequences/11.txt @@ -0,0 +1 @@ +GGGGGACGGTTTGTCTCACGCCTGTTGGTACCCTGAGTCCCCCACAATACCACAACCGTCGATCTTGAACGGTACCCTCATAGCGATAGAGACCCTTGCGGCTGAATTGCAATTACTCCAGTCACTTCCTGCCGGTGACCTGTCATGTATGAACAGGAGTCTCCTACTGGAGTAGTCACTTTTTGTAGACACAACTCGTGACTCACGGCGGGCGTGACTCCGCCTTATCACTTGGTTTGTATAGGGCCACTGGAGCCTGCGCTTGAGTCTTCGCTTGTAGCAGTAACGTTCCGGGAACACCCGTTGGCTATTCGGCGCCCGCGAGGTGCAGCGTAGCATTTTCGCGCCTCCAACGTCATATTAACATCCGAAAGGACCTATCTGGAACCAGACATCTTCGTTGCGTTCTATATATCCGCCCCACGTGGATGGATGTCGGGCTCGTTGCCAATAGAGCCTTATTAGCGTTTTCTGGACAATCGCAAGCAGGTCTGAGATGACTGCACCTATTTTCATGGGCACGAGTCTCTTGTCGGCACCTACGACTTATGAACCCGAACATGCATTGTTCCCGAGCACAGCGGACACGCAGTCGCCTTCCCTTACGCCATAGTCTGGGCCCCCACGGACTATCCCTCTAAGCACCTCGTCCGCTGACTATATTTCGAGTGAGTAACCGCTCCACGTGATGCCCCGGTTTGACAACATTACGCAGAGTCTCACAGCCATTGCTTCCGCCATGACATTCCGCTGGCTTCAACATAAATACACCCTACACAGAGACGGTTCTTCGGTCCGAAGTTCGGAGCTGCTTAGGTTGCAAGCAAAACCCTTAGGTCGCCAACCGTGTAGTTAGTCTCTGGGGGCGGGATGGGTCCTAGCCAGAATGATGATTGAAGAACCGTTCAGCAATTTTTGTTAGCGACTTTCCAGACGCGGTACCATGCGGTAGTACCGAAGGAGTACCCAAAGGTGGGCTCCGTTTTAAAAAAGGTAGCTGGGGCACCGGGAGCATCACGAGTTGGGTCGACTGTGAGAGTTTAGCACCAGACTTAGCGCTGTACCTACGACCTGGCTGTTGCACACGTAATACCGAAGTATAAATCACCTGTTAAACACGATGGACTAGTGACTTGTAGCGGTCTCCGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACCGTAAGAAGATAACTAACACCCCTGATTGTACTATGATAAGGTGATATCTAACCATCAATCAATTGGAAACATTATAAATATAAGTCTTTGTGGTCGCTATCCTTGACTCGCAATGATCAAGGACACGGCTGCCTGATGTGGTCCGCCCTTATTTTTAACTCGAGGGACGGCCAAGGGGGTATATGCGACAGCCACCAAACCATCCTGACTCGCAAATCCCAACCATTAATGATGCTTAATTTGTTGGACGATAGGTAAATATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGACTGGAAGTCCTTCAGCACGACCCGAGATCATGGCCAGATATCTCCCGGCTACGACCAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGCGAGCGTGATTATAGACGACCATCCACTTCACTTGTGTTTCTGTAGGTCATCAGATCACGTCATCACCGAGGAATAGCTGTGACAATCCGTTAAACTATGGACGCGAAGGGCGAGATGTTATCAGAACCTTACCGTTGCCGCGAGCAGGAGCGTACTACAGGCGGGGGCGCACGTGCCTCTAGTCCGGCTGTGAAAAAGTTGGTCCAGCACTACGTTCTGCCGCCCACAAGTGGAGTACGCCAGTGGGGGTGATGCTGCATTCTGCGCTCCAATGGTTACGTCGGTCCAGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTGACCACTATATCAAGGTGTCTTTCGGTCCAGGCTAGGAGGAACTTACCTCGCGGGAATAAGATCCCCAGTCCTTTTTAGCTCGACATTCGTGTTTTCTTGGGGACAGTAACTCATCATCCAAGGTGTAAAAGTATTCTAAGGTGCTCTCTTCTATGATCACACACTGCATCCGCTACTCAACATAGCTCGCGGGCCAACAACGTAGCGAAAGGTCGATTCTCCATACAAAAATATCATACTAGCCGGTTAACTAAACGGATTACCTCTTCCGCCGGAACATCTGAATCCATTACTACCGTGTGGTGCATGTTCACATCTTCGCGGTACATGCAGGAACAGTATGTAATGCTCTCGCGAGCCCTATGTGGCCAGGCTAAATGGGTTTACTGCTCAGCTAGTCCCGCCGAAATGACCATCAAATTGCCCGCTCACCCTTATCGCAGACTTCTACGAGAACGAGGTCCCGTTGGGATCAGAGGGAACCCCCAATTGTCAACGCTCCGTGGGTAGGAAAGATCACACCATGTTATCGAAAACATGGGTCCTCTGTATGTCGTAAAGGACCCAGCGAAAAAATTTATTAACGTGGATGGTTACCAGCTTGTTTTAAGAGCACGTCGACCGACACCAAGTCAATCTATTCCCCTCCATATCACGTTGCGAAGAGGTGCAGAGGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGAGGGCATCACACGGCGGTATACGCATTCAGACCTACACGATGTAAACGCCCAGTTAGGCGCAGATTATCACTGTACACCGACGTTCACCGCTGATAGGGTACTACCTCTCTAGAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCGTTCCTAGTTGCTACCCAACTTGCCTCAATCGGTAGCACCTGAGCACTACGTGTAAACCTAGTAATGTTATGTACCGTGTGGCCGGAGTCTCAGCGACCAGAGAGTGCGAATTGCTCGAATATAGCCTCCGCCAAGTGATATCATAGTCCGGGTAACCAAGTAGTCTCTGTCCGACTAGGCCGCAAGCTTAGTCTAATCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGACCAACCTAAGTCCTTCGCGTGGGCTTTGACGGTCGGAAAAGGCAGGCCTGCCTTTCTCAATGTTGGATACAGTACCACACATCACTCCGCCGTGTTAGAGCGTAGGGAGACGTTGAGAACCGAACTACCGTGTCGCACATCATGATTTGCTTAATCAATTATTCGGTTACGGTATTCACGCGGACTCCGACGTATAGAATATAAGGTTTACACATGCGAAGAGCCCTGTGTATAGTTGCCCGCATCGAGGGTAACTATGTAAGCTATTGTGTGTGAGTAGTTAGCTACTAACGTGAGCCACCTTAAAACGCTTTGCAGTGAGTTAGGACCTTCGGGGTCCGTGCCACCTTACGTTCGGCACTTCTCTACTTCCTGGCCACCAGCGTTCAGTCGACGCAGGGTAACCGTTCGCGCCACCAAGATAGAAAAGCGGGTCAGGGAGATAATGTACTATTTACTCTATACTACATCACAGGATAATGGTAGAAGCGTCTGAAATCCACCATCGCTCTCCAAATGGGTGGTCGTTAGTGCATTGAGGACTGATCATGCGGCCGCTTTGACGAGCAGGGAGATCTTATGCTGTATCAGGATATGTCGGAGCTTATCCAGCGGCCACGCCGAAGGGTCACCCCATCAACCAGTCGGCCATGTATGTATCCCACCGAACCTGTGATAGTCACTGATTCCGGACTAAGACAGCCGAGTATACAACAGTTTCGCCACATGACGCAGGGGACTATGTCGACCGATACGACTTCCAGTATCTTCTGTACCTACAGATTCCACTGCATAACTGTTAATAGCAGAAGAGAGTCTGCATACGATGGCTAATTAACGGGTCTACCGAACTGCGTCCCTGGCAGATCTTGCTAGCACTCCGCTGCAAGCACACTGAGGCTTAAGCTATTATACCATCTTGCTCTGGTTGCAGACAGGTATGATTCACTCTGTACCTCCGGATCTTTAGCCTTGCATTTACGTCCGGCCGTAACGCAGAAAATTATCTACATGTCTGTCAGTCTCGCGGCCTGCACCGAGTGCTCGTCGACGCTCTGGCCAGGGCGAAGATCAGATTCCGTTTGACTTAAGGGTAGTTAGTAGGCGGCCAACGTCTGGTGAAAGGGCTGTTAGACTTGTAGACTTCCGTCATTGGGTCTAATACTGCTATTGATCTATGCCTGCCAATAACACGATGATTAGCTGTATAGTGGGTAATCAGGGAACGTTTACGTTCCTCAAGAAAGAACTCAAAGCCCCAGATAGAAAATACAGACTACCCAACTTGCGGGTTCCACTATATGTTCACCCGTTACTTGCTGCAAACCGAGATCACCCAGCATTTCGACCACGAGCCTTAGATCCAAATGCCACACACCAGTTTAGCGATGAATGTGTATAACGGGTTCTTACAGAGAACTACCAATCCGTAGCCTACGACACCACGGACTCTAATCACCAGGAAGATACAGAACTTGTGGCTGTCTACTGACCGTACGGGTTTGGCCAAAATGAAGCCGCCTAATGGTGTCACCGAGACAGTGTCTCGCTTACCAAGTCCGAGGCCCCATCACGAAGCGTCTGTAGATAAGGATCCGTTCCGGCGCCTGGGACCCGATCGAGAGTTCAGCTGCTGAAAGGGGTGGCGTCGTATGCATCCTTACCTACATCAGTTACGTGCCTCCACCGTTCACAGGGTGGGAGCCTTGACTCTTGCGGAGGGCGGACTGCTTTTAGCGCCTACAGGTCGTACTGATTTAACAAAGCAGAAGCGCTGCCGGGGTCTCATATGGACTATATAAGCGACACACCTTGGACCGCAACTCGAAGACTTCTGGCCGCTAGTGCCCAGGATGTAAACCGAACTACGCCAAGTTGGGAAGAGAAAATCCATCTGACTGCACGGTTCTGTGGAAGATAATGGCCCTAACTTTGCTCTATTAATAAACTATTGACGCCCAAAAAGAACATGTACGGACTGACTGGTACTTCAATTAGCCACTGGTAGTAGTCCTCGATTCAAGGAATCTGTGACAGTCGTACCGCTATATTAATAAATCGCTAAGTGCCAAAGGTCCGACCGTACTGACTGCTGATGTACTTGATTCACGGGATGTTAATAGGAGCTTTGCAATGTGTGCTTAAGTCCAGTCATCTACGCGCTTGCGGCTTGATCCCAGAGTATAACACATAAATCAGACTGTAGCG \ No newline at end of file diff --git a/wk6/pset/dna/sequences/12.txt b/wk6/pset/dna/sequences/12.txt new file mode 100644 index 0000000..e452e64 --- /dev/null +++ b/wk6/pset/dna/sequences/12.txt @@ -0,0 +1 @@ +AACGATACTCCCTAAGACCCATCAAAGACATAGATCTGTTGTAATTCCTCGCTTCCTTCTAAATGGGCAATGAGGAGATCATGACTTTGGCTACAATCAGTCAAAGAACTATCCCGGCCGGGGAGCACATAAATCCGCATGCGCACAAAAGGATGAAAGTACTTTAAAACTAGTACGTCACTTAAAGGGAAGTAGAGTCGCTCCTTGGTATGCTCCCCACGCCGCTGCCCATTTAAGATTTAGCTCATCCCTCCGGGGGCCGTCGCTGCCAACCTAAGTAGCTCGGAAGAATCTCTTTATGCAAACTCTCTTCTTCCCCAGGGACAACGTATGCTAGCCACGCGCGTATTTAAGCCAACCCTAGCCAGCAGTCGCAACGGCAGCTCCCGTAGACCGCAACTGACGTCCAGCAAGCTTTAATTGGCCAGCCAGAGGCGCGAAAACGGGTCGTTGCAACAACTGTTATTGTTGCTCCTTCCAATTTGGCGATATATGATATAAACTGTATCATGTTCCCTACAAGAACTCACCACTATCCGGTACTCACCAATTGTATTGTAATGCTGTGTGCGCTAGGCCATATCACACGAACTTATCTCCGCGTCTCTTGCAATAGTCGACCAGACTGTATGTGATTCGTGAAGTACCTCTGGGAGTGAGTGCTTAAACACAACAGTGTTGACCGTTGGACCGCGGATGGATTTCCTGATACGAAAAGAGGATGTAGGCATGTGCCTAACGCTGTCCGCCTCCACGTTAATTCAACAACCACTAAGATAGCACACTGTTGGAACCGAATCAAGCCACCAAGTAGACTAATGGATTTGTGGAAATGGGAGCTTGACCAAAACTGAAACCGAGTTATTCGACAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCTGGGCAAGGGTGTCTAATAAAACTTTGGAGTGTCCGGCAGCTCCAGGGATGGTCAACCCGGGGATTCTAGGCACTTGGGCAGGTAATCCGTTGTTATTGCAATGGGACAGCCAGGTCTGAGTGGAGACGTCTGTAATGTAACGACAAGTGGGACGTAACATATAGCCATACGGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACAGTAGGTTGACTGGATATCAGCAGTTCTCCATGTCCTTGTTGCTGCGTCGTGGCGGTATGTTCGTTCGACCGGCGAAATCGCCTAGACCCGTAAGTACAAACGACTCCGCCTCCACTTCTTTGCATATTGCTATCATCCCATGGGAGACACGTGTGGTGTCGCTTACGAAGTAGGAACCTGCAGAGTGTAGCACTCTTCACTGGACTACGCGACCTAACGTAGAACCCGGTAGACTGTGTTAAAGGCTCGGACAAGGTCGGTGCCAAGAATAATGGGCAAAACCCAAGCCGCATTCTATACACCCGTGACTTCCCAATTTCTGTGGCCCGAGAGCCGGTTCAATTACTTTGCCGCAATGATGACGGGTTGCTTATCCGGTGGAAATCCGAAGCATTACTCGGAAACCGCACCGGCATGCCATCATTAGATACTGGGAAGGAAGGGTCACTAAAATAAATTGAGGGTGACCCCATTGACCGTGCCGGAGCCGCTAAAAGACCTCGAACTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGGTAATTATGGCTTTCTCGTCACGCTAACATGGTGGGTAGTCAAAGCTAAAATTGATGTTCAGCCCTTACATACAGCGGATTCAGAACGTGATTACCCAGATGAGGTCTTCACCCGACGCGACTTTCTGCTAGCGGCGTGTTGATTCACAGCTTGCGAGGTGATCTCACTATTCCGCAGTTGGCCCTGTATTTGAGGAATATTGCTCAGCACGGCTCAGAGCCGATCCAACTCCTCGAAATTGGGTCGCTTATTATACGGTGGGAACCCCGAGACTAACATGACGGGCCAAGTTCAGTATGCAGTGTCCTAGTATACGGGGATAAAGTTACGGAGCCAGGACGGTTGAGAATACACCAAATGTCCGGTTCGACACTAAGATTAAACGTACCACATCTATTATCTACACAGATACGGGCATCGTGAAACCCAAGCGCAAATCGGAATATTGTCTGCGACCAAAGCTTCCGGATTAGTATTCAGACCTCTTTATACCTGAAGACATGTAACAGGCCCGAAGTCGCCTTCGGAGCTTACCGCTGTCCGGTCTGGTACTATTCCCGTCAGAGGGCTGCCCGACTATCGGTAGGACCCTACAGGGGCGTCTGAAAGAGTTCGATAAATGACGAACGCGCCTAATCGGTCCACGTGACGGCCATAACGGATGTGTCAAAGAGTTTCGCGCTACAGGCACCGATGGCTCGCTGTCCCAGGCCAGCGCATCTCCTTTTCAGCCCGCGCCGGGGAGGCAGATTGGTATCGATAGCAGGAATTAGAGAGTAGGCACGACAGCTAGAGACCGGGAAGAAGCCTCCAACTGCTCGTAAAAGATGTTTGGTCACCTATCATAAACCCCACATACCAATGCGCAATGGCGTATTCGCTGTCAAGAGGATTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACGCACCCTTGACCTCTTTAGGAGTTACAGGTCCCGTGGATGACCGGCGCAACCTACGGCCACCGTAGTGGACACAATACCGGGGGCCGCCAACCAGAGGGGTGTCGGTGACCGTGTCCTGTGAACATATCACCATTTTGGTACGTCCGATCCTACTCTATGTGTACTGTTTTTCGCAAACAAAATGTGCGATAATCGTTGTCGGGAAATATTTTCCCTCAGGTGGTTCGGGGGGTCATCCTGAACAGTCACAATGAACACGGGCGTTTCTCTTCGCTTATTGAGCTCCAAATCCCTATCTTCTCGAAGCTCGATTAAGTCTTAGTCAGTGGCTGCCGTGATACGTTGTGGCTGGCTGGCAGTCTTTAAATTCGACTTTTCAATGATGTCAGGTTCGCACGTTTAGTGATTCGCGATCGATTACCTCCCAGACTGCCGGACTACTCCGAGCAAGAGGGGTTGACCTATTAGCATCGCGACCGCCCTAACACTCGCGTTCTAAGGCGCTCACTACGACGTCCAGTAAGCTGGCACGTTCTGTATATGTCTGGCTCATAGAGTCTGAGTTTGTCAGCGGTCACGTTAAGCATAAAACTGCCAACCTGGAAAATCATATTTATATTAAGTGTCGTAGTGGTACGGTATGACACGATCGTTTTGGGAAGTAAGTGCCCATCCGTGAATCGGCTACAGGCATCTGAACTAACAACATTGTCCCCCTTTAACATAAGGTGAGGGGTCGTTTAAGAATGAGCCAGCACAAGACATATGACGTGTTCCCCTCTGTACGAACTAAGGCAAGTGTATGGCGTTTCTCGTAACGCTATGTAAATCCTGCAGTACACTAGCATTCGAATTAGTCACGTGGGTTCATTAGAGCCGGGCTGCATACGGCTTTCACTCAAGGGTGAGGCCCGGCACGAACCTTTGCTTTGTCTGCTGGATTGCGTTAAGGTGTTAATTATGTTGCAAGTATCCCGATGATCCTAATACGAAAAGGCTAGGGAATAATCGTCGGAAACCGACCCTGATCCATCTCGGGTAGGCTCTGATCAATATTCAGTGACAGGTAGGGACCGCTCGCAGACTGGTCTCCCGGGTGATTTAAACCAAGGCCTGCTCTCCCTGGCTTCAAATATCTCCATACGTGCCACCTGCAATGGTACTTTAGAGAGAAGGCAACACCCGTGTCACTTATTCCGTCTGTTTTAGCGAGACAGGTCACCTGCATTTATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCGCGCTGCGTTGTAGAGAAGGCCCTCGTGATGATACGGAACCCAAAGACAACAGTGATATAAAATGCGGGTTTGACCATTCTGTACGTAAATGAACGCGTGTTAGTTGACAGGAGGCACGCACACATTGGTCGGCTGGCATTGGTCACGATCGGCACCTCGGAGAGACCCGCTGTGGTGGAAAAATTGCTCTCACTATAAGTGCTAGGAAATACTGAACTGTAGGGAGAGAGCCTGTTTGTAAGTGCCTTCGTAAGGAAGAAATGTCATAACACCAGTTATGTCCAGATACGTTTGGTCTTCCGAGACTAGACTAGTTAAAGGTGCCTCGTATTACTGTCGGAAGGATAGGGCCTCAGGTCGAGCTGAATTGAGCCGGCATCACTACGAAACGTAATGGAACAGGTATCGCTCAAGTTCCTATGGCATGCAGGGCGTAGATTGCGCTGGCCTGCATTCGCGGCATAAGACGTTGCAGCGAGAGAGATCCACGCGCACGGACCCGTCACTACTAAAGCTCGACCAGCGAATTCGTTCTCCCTCGAACAAGGTGCAGGCCTCCCTCCCTACGTGAGCATTGTGGCAACTGATAACAGCTGTATCTCTACAAAGCCCTCCGGATTCGATGCCCTATTTAATTCTACACCGGTTCGGGTACTAGGCGCATAAACTATGACTCCGGTCAATACTTCCCTAGTGTTTACCTTGAGGTTATCAATTGACCGCTTCGAGGCCCAGCCCGAGGACGAGGGGTACTGACTCCCCCACCCTGCTGATCAGGGGCAGCCAGGCACGGGGAGGTCTTAGATCTGCCTACTTTTCTACGCTCCGTGTCCGATTATTAAGCACATGACTAGCGGAAGTGAGTACCCTCTACCAGCCCCTGGAGTGGATTGAGCGTGGAGCACGAGAAAGAGAAATGATGTCTCGGCATAGACGAAAAGCACCTAGGTGACATCAGGCACAAGGACTGAACCGCGTGGTCGCGAAAGATGAAAAAACCACCGAAGGTGTAAGGGACTACACCGTCTGTCCAATCTACGGTTAAAACTCGCTTAACAGGTCCCA \ No newline at end of file diff --git a/wk6/pset/dna/sequences/13.txt b/wk6/pset/dna/sequences/13.txt new file mode 100644 index 0000000..eb02b2d --- /dev/null +++ b/wk6/pset/dna/sequences/13.txt @@ -0,0 +1 @@ +AGCAATCCGGTTAGCGCTTCGCCGTCCCCTGACAAGTCCCTGTATTAGACAGAACACCAACGACTAGCCCAATCGTTACGTAGTAGCGCTTGTGGTGTTCCTACTGTCCCGGGGGGGTGGGGACCGCCCTCCTTAGCCGGCCTATGCTCGCGACAGTCTCGGAAGGATCCAATCGCGAATGGCGAAGTGAACAGGCTCATAACGGTTTGGTTCGTATGCATTGAAGGCCTCTGCCGGGAAATATCAAGTGGTATGCTAGCTGTGTCATAGTGGGTTATAAGATACACCCTGCAATCATGACAAACCTTACTGGCCTGCGCTTCGGACATAAACGCTTACTACTTGTATACCCTATTTAACATAGAGCCAGATCGAAGACTTTTCACGAGGCTACTAGCGCAGATGTGAACGATCCTAGAGTCCGGGGGCACGTTCGGGCGAGATACAAAGGGGCACGCAGTATCATTGATGGGCTCTGGCAGCACTATTAAATAAACATCAACTGGATGTCCCCGTACTGCACATTACTAGCTAAGAGTTCATATGGACAAGATCATGAATCAAACGCACTCCACGTTCGATAATTAGTGTCCCGAACGCTCGGTATGTTTACTATCGCATGGTATCGATCAAAGTCCAGCGAACGCACCTCATAGGGAACGCAAAACCGCCGTACTAGCTAGTGAGCGGCCAGACGTGTCGGTACGTCGCGACAGCGGGCCTTCAAAACCTTCGAATCCACAGAAAAACTTAGCCACAGTGTCGGCCGAAGGACGTATGTTGGTCAGACGAAATGTTGCGTGCCACTATGAGAAAGAAGAATACAGGGACGGCTGAATCTCTCGCGCTTAGTGTCGATGATACGAGAATCGCTGCCGTGTCTTAGTAGAAGAGCGTCGGTTTCTATCGGTCTACCTACAGCCATGACGTGCGGGTCTGACATTCTGCACACACAACCGTTCCTTAAGTTTCTTTACTCGTGATCCGACTGTTCGGTCAGTCCCGCCTCATGTACAACAGTGCCGTGTGCTAATATCCTGGGTCAGACACCGCCTCGTATTAAAGCGAGGGCGATCGCTGCTAGGGGTGCCTAATGGTAAGTAATCGTTCCCAAGCAAGGTCTTTGTGTAGCATCGATCTCTATAACAGTCACCAGGGCTCTTAGGAGATCTACGAGCCGACTTCGTCTGTATAAGGTGCTGCGTAGGCCCCCGAAACACTAATTCAGGCGTCTGTTAACGAGGGGAACCCCGGTTTGACCATGAGCGGGACCCGGCTCGATTGTGTTACCTATATGAGTACATTTGGTAAAGGCACGCACCGCTACATGCTGGAAGTTGGACCCATGAAACAGTTATAGCACTCTCAATGGTGTAAAGACTTGTCAGCACAAAGTGAGGCAGCGCTAAATGCAACCATGGCCTTCCCGACCGTGCTTCTGGACAGGTAAATAAAACCGAAACCTGTTAGGCGGGCGCCCGTTACACGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCGTCACTCCCTTATCCAACTGAGATAGGGCTCAATTGATTCATTACTTTGTATTCATATGGACTGGTGTGACTCGGGAAGAAGCCTAGTGGCACCTCACGATCCGCTAATCATCAAGCTCAACGTTTTCCCAAAAGACCCTTTCACCCAGTTCGATACCTACGAGATAGTAAATGACTATATTGTTCCAAGATCGTCTTGACAGGTTGATTACCTGGTCTTGAGAGCCGTTCTAGTCATACAGCGTCTCATCTTAGCCGGTAATCTGTGAGTATGCTTCAGCCTTTAGTTACTGCACGATGGGCAGGAACCTTTGAGCGCGCGCTGTCGCCTGCCGCTGCTGATGTTGCGTAGACTTGAGTAAGGCTCACATATAGGTCCCCCTTGGCTGGGGCGAACTTACCCCAGGCACTAAGGGGATTTGCGCAGTATGAAGTGGCATGGTTTTAACCGATGTGGCAATATTGTTTCATCTATGCCGGACGTCGTGGGACGAAGTATATGTCACAGATCCGTTTGATCGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTGTCAAACCTTTGCGATACGATTAGGAAAGAACTCAAACCCTATCTCCGTAGGCCCCCTCTCCGGAAGCTCCAAGTTAGAGGCTGTACCACATGAAGACATGCAGAGGACTTGATCGGGTCTGTCGTTTCCCGTGCGGGGGTGCAAGGCGTACAATAGGAGCAGGAAGTTACAAGTCACTGACTTTCGCTTGAAACTACGATACCACCACTTCGTCTCCTGACTTTCGTCGGGCCAATAAAACAAATGGGGCGGATGACCCTGGGGGGATGCCACCCTGCAATTGGAGTGCATGGCTCAGGGTTGTGCAAATTCCGAGCGGTCCACGCGAAAGCATTAATCAAAAGTCAGATGGCTCCGTAACACACCAACTTTGTCCGGATATCCTGGGCCAGCATGGCTTTTCCATCCACCCTCTCCGGTGGTCAAGAACCAACTGCAAGCCGAGAAGTGAATTACCGTACCGGACGTATTGGTCGATCTGGGCGTGTTAGAAATTGTTACAAATCCTCCATCGTTCCAATAGCCTTGTATTACCTATTATAGGCCTTGAAAAGGGAAAAGAGGACCGGTAGTATCTGCTGATAAAGACTGATATTAAAAACGGCGCGTTGTTATGCGATGCGTCACTAAAGCCTCGGGCGCCTAAGGAAAAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTGTGGAAACCTATTATTGTGCGATCAACGTTAGAAGCCAGAAAGACTCCCCAAGGGTGTACTACTCGTCCTATCAGATTCCAATCTGTCCGTGCAGCGCGAACTTGCGTCGCGTAGCTGTCGCTTTGGCTTCGAACCCCCGAACGAACATGAGCTAACCCTTTCCGTACTTCGATGGCTAAGCGTCCTCGCTTTTTGGTCATGCTGACCTCCAGCTCCTGCTGGCCCTCAGTCAGTAGTAGGTCCAGTAAATAACTTGAAATGCCCGCGACAAGCGATGTCACCTGTTGCGTAGACGCTAGGTATGGACCATTGCAGTGCTGACTGGTCCAGGAGACAATAGGTAAGTTGCTAAGCCTCCCCTCGATAAATAGAGGCTGGAGTCAAGATAGAGCGTCCGTGAGTCTCATACCATATATCTTGGACTAACAGAGGAAGTCCGACACGTACAGACCACTGTAGCCTACTCTAGGGAGACCTTGTGATAGTCTTAAATCGACCTAAGAAGCGCTCGGACAGTGCCTAAAACCACACGTTGATCAATGCCCGCAACAGTAGAGCTGTGTAGTCCAACGGACCTTTGCAAGGGTGGGTTTAGCCCCTTCGTGGGGTAAGGAGCCTGGGTTCAGTGTGTTGGGGAACAGAATCTCCCGTTATGCCGCGTCCGAGCCGTGTGAAGCTCTTTGAGTGGATGTTGGTATGCCTTATATGGCAGGGTATCCAGGGCTTCATCTTCTCGTACACGCTCCCTCGCGGGGAACTATCATTAGTTGACTTCGGACACGCGGAGGAGGCAAATCACCACATCTGTACAGACGTAAGTACACAACTGTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGATATCAGACGGGTGTGGAGGATCGCGTTTCATTCGGCTGCTGCCCCGGGTACATATTACAGGACCGTCGCGGGGAACTTACATTATCCGCCTCGGCAGAAACGCCGTTCTGTTTTCTGCCCTAGTGTCCGTCAAAGAATACGATTGTCCGTCGATACAATAGTTCCCAGGGAGCTGCCCAGCCGCTTCTTCCCGCGTGCCCGGGGAGCGTTCTACAGAGACATAACCGGCTTTGCTTAACCAGCATAACTATATCGACAAGTGAGCAAGATGGGCTAGGCCGTTGAGCCAGCCGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGAACAACGTCTAGCGCGAAATCACTTGATAATTCACGCAATACCTGCCTGATTTAAAGGTAAAGACGTTTTGCAGAGAACAAAGACGATGGACAGAGTTTACAAAACCTGGATCGTAGGACAGGGGTTTTTAACATTGAAAATTCGTCGAGCCCCTGACTCGTACAGACAATCAAAGTAGACATTCTTTAACGTTCCCGCCACCCCGGTGGGCAACTATAAGGGGAGACTCTGTTGTAGAACTTGTGAGCATGTCTCTAGTCGGAAAGTGCTGGGTATGACCCTCCACTGATGCTTAAACGGTACCGCAAACCACAGCGACAGGGGTCTTATACATCCTCATGGGAGCGGCGGGTCGGGGGTGATTAAGTATTGAGAAAATCCTAGGTATTATTACGTACGCCATCCAGCGAGTTAGGTACTGAGAACAAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCCCCTGTTCCGCGGTCCGGGAGACGGAGGACTGGCTGGATCGTCAGTTATGACTCCGTATTTCCACCTCGAACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACCAGCCTTCTTACCCACAAATGTAAAGGGCGCTTCCTGGAGCGGGAACACCTTGGTCTTTCACTCTGGATCATGCCCGGTCGCTGTGGCCACTAAAACGACAGCTTTGTCGGTTGGCATTTCTCGTGTAGTTCGAGATCAAACCATATTGGCCGTGGACGAACATCCGTATATGGGCTTAAATTCACATGAGGGCTGATGTACACGATATGGTCGCTCTAGGACCCGCACACGGAGAAAGGGAGGAGGATAGGAGTGATTACAAGAGCCAATGCTACTCAACCAAAGTACTTCGTACGTGATAAGCGCGCTCTGTCGCCCTGAACGAGGTCGCTTAGCCATGCCTACCCACATCACATATACAGGGAGAAACAGTACCACTACATGGTCAGCGTCCCGAGATAACGATTACTAATGGCGTTTCGTTGACTTCCCGGTATGACAATTTACAGGACCGGGTCGGTGTCCCTACCGTCTCCAAATGAAGGAACCAGCTTCCGACCTCCCTCTCACGGTTCAAGTACGAGGCCCTTCAAAAGCTCCTCCTTTCGAAGTGCCCAGATGAAGCTGCTGGAGTGAATAGATTTGCACCCCTGTAGTTGCGCGTAATGCTCGGGGATAAGTAAGTTAATCATACTCGGCCGGCAGCTGAATAAGCTATGGCATAAAAATTATCGCAGGTCCATATAATCACGTAGCAGGGCAAAACCCTTGCGGGAGGATGCATAGACAATATTAGATGGTGCCATAAGATTCCAATTTAGCGACGTTGATCAAAGAGGTGGGTGGCAGCCTCGCGGGGTTTCGAGTTCCAGGGTGCCGTGTACGGGCCCCACACTCCGAATTGCTATGCGCCCCAATCTGTCAGGAGCGTAGTCCGTCTTGCATATGCGTACGAAAAGATGGAGTGCCTCCTAATTATCAGAAGGTCGATCTGAGATACGTGACTTAAGCATGGAGGATTTCGATCTTCACAAAGCCTATAGACCTACCGCTATGATATTTGACGCTCACTATTACTGACATATGT \ No newline at end of file diff --git a/wk6/pset/dna/sequences/14.txt b/wk6/pset/dna/sequences/14.txt new file mode 100644 index 0000000..f0613b5 --- /dev/null +++ b/wk6/pset/dna/sequences/14.txt @@ -0,0 +1 @@ +GGAGGCCAAAGTCTTGTGATATCGGGCAACTCCCCGGGAGGAACACAGGCCCACCGAAAACAGCTTGAAATGGGAAACGTTCCCGATCTACGCCGGGCCAGAGGACGAACACACGCTACCCGGGATCCACTGTGATTTTCGGATTTCCAACGGCGGAGAGCCCCGTTCCCTAGCAATTGATCCCCCGGAAGAAGACACGGAGGCACTACTCAGGTATGGGTAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTTTCAAATTACCTCATAGACTCATCGCTTACCACTATCCAGTTTGCTCCTAAACTACCTTCCCACGACGACTCCCTATTATTCTTATTCTGGCAAGGAATAAGCCTGTTTGTGACAAAATATCCATGTGGAATTTACCCGCACCCAGTCCACTTTGTCAGGTGGGACTAGCGATCCCGCACTAAAGCCTCAATATTCTCAAGTGTGACAAAGGTGTCTTATCGTGAACGAGGCGTAACTGGTAATATCCGATAAGTGGATGGCGGAACTATAAGCTGTCCAGGTGTACCGTGGACGGGTCCATGACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGATCGTTGAGCGTCCAGGTCAGGACGGGCCTTAAAGAGGCTTGGTGACGGGAGTTACTAACAGGAGGCTGGCACGAAAGGCAATCCGTAATTCGGCCCGCACTCCGCTATTCCTGCCGGTTAGTTACCTACCGCCCTCCGGCAGCACGAGAAGTCAAAATTACCGGTATCAAAACCACACGAACCTAGAACCATGGCGTTCAAGAGATCGCCCCCCAGAACCTCCCCACACACGACGTTGCGGGAAAGCCAACAATTGACTCCATTGCCTAACATATAGGAAGTTTCTATCGCCGTACGCTAGGGCCTATTTGGGGGCATCGGAAGGATAAAAAGAACGCTTAGTAAGCTTGGTCTATAGTGGTATACCGTAGAAGCTGACGCAACTCTGACGACTCAAGTTTATTACCACTTTAGTAGTCGCTTCTTCAGGCCTCTCTTTTGACACATGGGAGACCGGACGGTCATAACCAAATTGTAAACAGCGGCTTATCGTCATACCCCGCTCCGATAGTGGGGATAAACTATGTGGTACCATTGAGCGGGCTACATACCTCCGGTAGAAGATAATACGGCTATCGTACAGTCTGTGGTCGGGCCTATAGACGAAGACGACCGGAACGAACGAAGCCGCACGGTTGGTGAGGTCGCATTGTCTGTAATACAAAAGGCACAAGATGCTACTAATCCTTTATGCCGCGAGCTGGCAACCGCCCTCTGGCTAGGAATTGGCGCGCGGTCACCGACCAGCTACAACGTCCCTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGAGTTCCTGATCTGTAGGCGGTATCATAGGGCATCGCCTGGCACACTGGGTGCCAGACTATGTGGAACCCCCCCGTGGGAGCTAGCTTACGGCTCAGTGCCGGTGCGGGGACAACGTCAGGGTTTCCAGTGATTGACGTCACAGAAGTGGCGGCTGGTTTTCTTCCAACCCACACATGGACGGTCGAGTCCCCTAGGATTTCGTAATACCCGGGTTAGAGGAACTAGTCCACGCTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACTCTCGTGAGCTTGAGCATGACTGATACGGAGAGGTGAGAATGCCGTAACAGTAACGGAGCCGTCCGTTGTTTTCTTTGTAACTTACTAGGTACAATGCCAGCTGATTGGCTGACACAGACATTTCCTGTCTTTACAAGTCAAATTCTTCAACTTACGCTGGGATATGGAGGGTCTCCAGGTAAGAGTTTCTTATGATTGCAAAACAATATCGGGTGAACCCTCCTGCTGGTGTTCGTAGCGGCGTCAGGATTGGTTGCGGGCACGTCTTTGTATCTTAGACTACTAGCGCCGAGATAGATAGATAGATAGATAGATACCTAGTTAGCTGAGGGGCGCGTTGGTTTTTTCCTACAGCGCCTGAGCTGGTGCAAGCATAACATGAGTCTGGCGCGTCACTCAGCCATGAAGGTAAATGCTGGGGAAGCGTTATATGTTGTGTCGAGCCGTATCGGAGCATATTGTCTACTGAATCCTAGAGGGGTGCCTTAATATGCTACATCACTAACCCATTTAGGAGACTAAATATACTAGAATCTGCCTGTTTGATATTTTCAGAAGAACGGGTCGGCGCTATCCCTTAGGAAACTACGGACCGCCTGCAGCGAAGGCGCCCATCTCAGTCATCTCACGACTCTATGTTTTCCGCCATTTGCCGATACACTTATAAGTCGCTCGGTCCTGCGTCACTAACTGAAATATCGATCATTGATTTGTCATGATAACCTGGTAAGGTAGATAAACTGTTGCATGGAGTGTAGATGTGTAAGAATAATTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTACGTCGCATAACCTATCCGGGAAGGGGTCAGACAAGCCTACCACTTGTCGGTACTGATTGCCGCAAGCCGTCTCAACCCTCAGATGGCAGATAGAAGGAGTCAACATCTGACGGCGTTCATTGCTCGACTCGGACAGAAAACATATCTCGTCCGCGGAATCCAGCACAGGCAGCAGTTGCCGCCGTGTCAGCTTCCAGCCTCCCAGAGGGGAGCCGGTGGAGTTCTCGCGCTACTCGCAATTAAGTGACGGTCCGACGTTCCTGCGGTAATGACGATGAGCCTGAGTTAGTAAGCATCATCCTCCAGACTTCCGTGACAGTTTTCAGCCGCACATGTTACCGTCCAGTCGTATTCTTCGGAGCTGAGGCACCTAACAGGGTCTCATTTACAGAGGGGAGATTCTTGCATCACTGTGAGTGTGCTCACAGACACCGTTCTTGTTGACTATGGAAAGACCTTAATTGCCATCGAGACTGAATATTGGCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCACGGAAGTTATATGCCACCAATCCCGTCCTGGGTCGTATGCAGAGAGCTTACGTACATGGGGATAGCAATATGAGAGACACGTAGCAGCAAGCATCTTTCTACGTAAAGCTCCCTACAATAGTTACCTTATTCATGTCCAGATTTACCGTGCTGGGGCCCTTCGACTCTAACGACAGCTAGATCGCACCGGCAACTGCCATCCCCTACGGACAATCTCCGTGCGGATGTCAAACCCCTCCTTGTAGGGTTACTAGTATGAGTAGCGGGTGAGAGCACTCGAGCGATGACCGGTTTGAGAAGGAAGGCATCGACGGGCAGTTGGCGAGGCTCAGCTTCGGATCCCGGTCTAACCGCTAAAAAAGCGACCGCGCTGAAATTATTACGGAGGAGGGACCACCCATATGCCGTTAAAAAGCGTCCTTAGAGTTTCGGTGCAACATGTAGCTGGATTAGCTCCCAACTAGGCACTATCTGGTGCCCTTATAGCTGCACTGGGGGTCTCGCTGAGGCAACTATATGGGGTTCGTTAGTAGAGATTCCAATAGTGAGCCCCCTAAATTGGCATGTAACGCGACGCGGATCAGCTGCATGAATCGAGGCTGCGCATCCTTTCTCGTGCCAAGCCCTCACATTAAAATACATGAGTTTGCACCTGTGGGTGATTGAAACGGTGATTGCCTTAGCTACACTGTTCAATTCAAACTCCAGCATATCCGGAACATATTTCTCTACCAACACATACAAAGTGTGGGCCGAACTGCTAGCCTGTGTGTCGATACGGCTTAGCCACTTTTTATAAACCAGCATCAATGCACATAACTTTCACCTTAGTTTCAAGTCTATCCGCGTCGTGCCGATGCACGGCTAGTCGACCTTAGGGGGTGGCGTCTGTTCTCAGGATTGTGCGCTGATAGCACCCGGACTACGTCACCTCGCCTGTCTACATAATTTAAACCCTCAAAGAAGATTCCTTTCCTTGGAGGTTGTAGCGGCATGTACGCACGGGATAAAAGACGATGGGTAATAGACGGTGGACCTGAAGCATACCGATGTTGCCTTCCGCCTCCTCATTGCGGGTAAAACGACAAGACAGGCATTAGCAAGGGGACGGTTATCGACATGTTAATGGCACTTTGGTAGCATGCCAAGAGCAGGGCGTGTCTCGGAGTCAGGTCCACGACGGATTGTGCAAGCACGCCTCACGCCCAAATATGCCTACTAAGGGTACGTTGGCCCGTATGTTCAAACGAAACAAGGCGTGACCATCTCAAAATCGAGCGAGCAAGCGGCACTTTTTATGTTTGCGCCATTAAACATCAAACCGTGATCGCTAAAACAGATAAACCCCATTAGCTATGATTTCCGATTGGTGAGGCGCTCACAGAGTTCCTACTACTCTATGTGGCCCACACCCTAGGATCATGGGCACGCCGTTTGTGTCTTGGCCATCCCGCAAGCCTATCTTAATCTCCTAAGACGTCAAATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTGAGCTAGGCACCTGGGTAACAGCACATAGCTTAACAGGTCGCAAGGTAGATCCTACTCCATGGGATCGCTCTGGGCATCCACGTAACCGTCCATCACTTATCGTTGCAGCACTCCTGTACTTCATGCAATCAAAGGTAGTCAGATTGTCTCAGATACGCGAATCCGGCCGTCTTCATCGGTAACAGAATGCCTTAGATTATCCCTCCCGTGCTTTCATAGTAATAGTCTGCCATACGTTACGATGCATGTTGGAGTGAAGTGGCGCTGTAGTATGTACCCCCTGAACTGATCTATTAAAAACTTCCACTATAGTTCAAAAATAACAGTCGCGGCACGACTCCATAAGTTGAGCCGGTTAAACGTCCGAATTGAAAGAGCCCAGCCTAGTGTGATTATCCCTGAGGCACTCGGGTAGAGCAGCACCACTGTTAAGTAGAACCGGATTGGAGACCCGCGAAGGAGAATCCACTGATCGG \ No newline at end of file diff --git a/wk6/pset/dna/sequences/15.txt b/wk6/pset/dna/sequences/15.txt new file mode 100644 index 0000000..ae2071c --- /dev/null +++ b/wk6/pset/dna/sequences/15.txt @@ -0,0 +1 @@ +GGGTGAATCTCGGACAAAAGGGACCCAGTAATGGGAAAACACCCTGTACTTTCATTTATCTTAAGGAAAAGGCACTGCGACTTGTGACTGTTTTGTGCTTACCGGTCTGCTGACCACCTCCGCAAGATTCACCGGGCCCTCGCCCCTGGGCCCGCGGGGCTGTTTCCCCATTAATTCTGCACGGGCGAAGGCGGCCCCTCGGCCCGATAACGGACGTTGAAAGGCACCCAGTGTACCAACTCTATCGTTGTTAATCTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTATTACAGCGGCATCACTATACTATAATAGTCCGACATGTTAGAATTCTGACGCGTCGAACCGTAGGCGAGTCCGAGTTTCCTACTCCTCACGTGGTCAGAAGTCCCGCTCGAGGATACCGATAAGCCTGAATTCTTCATTTCTACTAACTCGACAGACTGACTCACGCTAGTTTGGTTACTGTCCCGTACCCGCGTTTTCCACCTTAGTCTTGCTGGCGTACACTTTCAAGCGATAGCATGCTTACAATAGGCTATTGCGACGTGTCCGATCCTACATGTACTCATATATCGCAACGGCCCAGGTTACTTAGGGACTAAACGGCCCTTTAAAGCGAGGGTAGTAGAATTCAGGCCACTGAAATTGGGATTATCTAATAAATCACCCGCCGCCGAGATAAGGCAGCTTACGAGTGAAGTTTGCATCACGTGCCTTTGTATTATTAATCTCGACTACCAACTCCTCAATTATAAGCAAGTTCGTTCATAAATAGTCAGATGCTTGGGGCGCATGCGGTATTGGAGTTGCCATGGTCTACACGCGGCCCTATGCAAACTTTTCTTAAGCGAGGAAGTCTTCCGTATTGCGTTGCATTTTCTCAATTGTTTTAGTCTTGTCGTAACCAATGCGGTAAGAATGCGTTTACAGGGCCGCGACCCCAACAATCCTTCCTTCGAGGAAGGTACTGAGTAGGGCTGGTCTATGCCGGTACTCCTTAGGTTGTTCACTCATGCCGATACCACTCTTGGTTTCTCACCCTTATTCTGGCACTGGTAAAAGATAAAGAGAACCTCCAGTCTAAGCGATTTACTTGGACACGCCCTTTTTGAAGTTCGGGCACACTCCGATTACCTAGAGCCCTAATGGGAGCCCGTAATTTCCAATAAAAGGAAAGTGGCTATCAAGCCATCCGCTCGAAGCACGTCATCCGGTACTTAGGTGTCCCTTGTGTCGCTTAATTAGATGTTGTACGAACGATATATACGGGCTAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACGTCCGGCATCCAGCTCGTCAATCTTTAAGTGGCGTCATCAGTAAGTGCACGTGGTCTTCCAAACCCTGTGGCGACACTATTAGACGTGGTCGGATCGGTCTTTATCTTTGGTTCTGTAGTAGGAGAACTCATGGGATGGTTATGGAGTTTGACTACAGCGTCTGGTCTCGGTAGTCCCCACACCCTCTAGCCCAACCACTAGAAAGTGACTAGTAATATGCGTTCTGCGAATCTCAGGGGTCAACCGTGACTATTGATCTTACCAGCGCATCGCTCCGCAAGCTCAGTAAATTTGATGTTTTTCCACAACCGAAAGAGCGATTAAGTACTGAACAAGAGTGTTAAGTCCAGTACTAACAATTAGATACATACTCGACTCGTAGAATCTTTCGTATTCCTGGTCGTACCCAGCAACGCCAGCAGAGTTTAGTCGACTGGTAGTTTGGAGTTTTCGAGGACGGAGACTGTGCATAAACTGTAGACATTCTGAAGCGCATGTCGGAGTGTATTCACGTGCACGCTCACCATGAGTTCAGGTCTATGGTGTCGGCGTTCACAAGTCCATAATCTGCGTCTCGTGACGTGACTTATCCCTTGTCACTCTAGTTGGACATCACAGTAGCGTTCGCCTCCTTCGTAATTCCTATCCCCAAAGAGAGTATTTCAATTAATACTCTAAACTCGAGCGCCGAGCGACACCATTCCATTCTAAATCTGGGGGCTCACGCGCTTTCAGTCGTCAATTTTATCGCGAAATAAACATGATCGCTATAAGATATCCCTTCCTCATCTGTTGCCCCAACCTGAGGCGTTCTAGACGTACACGATTAACGCGTTACGCGACAGCAGAATCGAGCTACGTGCAGAGCGTATCTGCGCCGGGGATCGCCGTAGAAGACGGCGCTAGCCAACCAGGGTTCGACGAACTGCCCTAGGAAACAAGCAAGCATGCTCGTGAGAGCAGGACCTTCTGCAGAAGATATTGCGATACATGAGTTTCTACGGTATTGGGTTATGGAATCTAAGAGGGCCAATGGAAATAGTAAGTTGGGGCGGATTATTTGAATACCGTTCGGTGGACTGTTTTCCGGAAGAGCGATGCCACCTCCTTGGTGTCTGCATCGAATAGATGCCCTGTCTTTCGTAATCGGTGAACCCATTAGTGACTCATTCGTGGCCGATACATTTACTTATACGTCTTGAGGCGCAGCAAGTCTAGTATGTCGTATAGAAAGCAGGTTTGCTTAGTTCGACTTAAGAGTGACGCTAGGTCACGAATTTCTCGTCCGGGGCATGTCAGAGATTGATTCCTTAGATACTGGCCAAACCGATACTACGCGTTGATAAGTGAACGACATGAAAGTTGACAACACCCTCTAGGGTTCGAACCAAAACAGAAAGTAGGAGCAACGTTCTCGGAGCACCACATCACTTGAACCGCCACTTCGACTTTCACCGAGTGACATAAAGACTAGTGGACCCCATCTGTTACCAATAAGGGGCGTGTAGATCAGCACTGGAATACAACACACGATGCCTCAGTCATCTCACTACGTGTCTCCTCGCTCCGCGTTCGCACTATTGCTCGCGCCCACCGCACACTACCGTGTTGAATGACGAAAGTTGCGGGGCTTACGCTCGGTGCAAAAGTTTCACATCTCTTGATAGCATTGGGCAACGCCGACGTATAGCTATGCAATTCACACGGCCGCAAAGCTATTTGACTGAACGTCTAGCATAGTGGTCAAACTGGCTCGAGCTAGATCTTGACGCACGTTCGGTATCTTGGAATTACCACCGGTACATGAGAGCAAAAGGGGAATCCTTGGTATGGAATTTACAAACCTGATCATCTTATTAGTGGTGTGATGAGATATCTTCATCTTTATAAACGTGGCGCGGCCACTTAGCGCTCAACGGCAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTCCGTCGGCTCTGCGACGCGCGGAGTCAGTCTTCTGCCCCGGGGTCAGCCAGTCAAGACCTGCTGGGAAACGAAGAGAAAGAACAGTGCTAATGCAGGCTCCTCTGACGTCTATGTACTATAGCTTTTCCGCACGCGGAATCTGTCATTGCTACAAGCCGTGCCCAGGGCGAATATTCTGGCCGCACCAAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACGGGGCTTTGCCGTCAATAGCACGAGCTGAGACGGGGAAGCCCGTATTTCATACAGGTCACGTTCAAGAGACAGCGCATTAAAGATCATGCGCGGAAGGGTTAGCAAGGTCGCAAAAGGAAACATTGTCTTTTTCAAAGGGGCCTCTGCCCCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCCAGATAAACACATGTCTTGCGTTTTCTCGCCTGTTACTGGCTCGGCTCGCCTATGTCTTTTATATAAAACTATAAGGGTGTCGTCTGCTCCGTTTGGTCGGCTGAACGAACCTATGTTCTGTCTTTACCACACTTTCTCCGTTGCAAGGCTCAACGCCCCCAATTTTAAAATGTTCGAGATTCTGTCTGTCTGTCTGTCTGTCTGAAGTTAATAACCGAAACGATCTAATTTACAGTAGACATGGGCGAATGGCGTAAGCAGACAGTGACCGATAACGCTTCCTCCGCGCAGTTGGCCCCGGCTGACTCAAGAGCGGTACGGTCGGCCTTCTTGGCCATAGCCTACACACATCTCAAATGTCGCAAAGCGAACTACCTGCACCGGAGTCCGGGAATCTACTGCACGTTGGGCCTCTTGTACTGATTGCTGCCCGCTACGAACTAGAGCATAATAAAACTTCCGCCGAACCATTGGACTGAGATCAGAGGTAGCTTGATATGGGATCAGAGTTAGTCGATCCAAGTGAAGCTTGTAAGCCAATAGATTGAACATAGGATCATATTACCCCCACCGGTCCCACATTGCTGGGACGGACCCTGTCAGAGAGAGATCTAAACATCATTTGGACTTTGCCTATCTGCGGGACACCACAGGAGCTCCCAGCGCACGAAAAGAGCGGATTCACTAATCCTCTGGCAGTCCTCTTGAGGCATGGTGGGGATGGGTAATTAAGTCGAGGCCGTAGCACGGGATCGGCAACACAAGAATGGCACAAAACATATTCCCTTAGCTCCAAGATGTCGTAGTAGTAGTAGGATGAGAGGCGTGTCATGGGTTCCGTAGTATAGTGCATGCCAACTGTCTTGAATGCTAATATAGATCTTGGAGGAAGCTGGATCGTTGGTCCCTCCGACAGACGATTAAATAGTGGCGTAGATCGCACAAAGTTGCATTAGCAAGCGGGGCGTATCTAGAGTTTACTGTGCTGTAGGATCGGCGCGCTAGCAACAAAAGATTATCCACACAACAGACGCCCTCTCATGTCATAGACCGTGGGGGGGTCCGCACTTTTGGATTGCTGCTATACTATAAGACTCGTCTATCAGAAAACTTCTCGATGGTCCGGAGCCTCAGGACACCCCCCTCACCCATCGCCGGGCAAATGGCTCACCTCGATAATTTTAATCAACGGTGAACATCCAATTCCACACGGAGAGAACCGTACGTCTCAAGATCACTGCTTGTTTAAAATTGCAGAGTAGACCGATTCCGTACTTTAGAATCCAGCGATCCCTCAGCATGTCCATTTGCTCGACTTAATCATGCTGGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGCCTCGCTATCGACGTCGCATACATGCTTAGTTCTTGCCCAAGTTGACTGACGATCTTAGTCATAGTCTCACACCTGATA \ No newline at end of file diff --git a/wk6/pset/dna/sequences/16.txt b/wk6/pset/dna/sequences/16.txt new file mode 100644 index 0000000..3c53500 --- /dev/null +++ b/wk6/pset/dna/sequences/16.txt @@ -0,0 +1 @@ +CAGTCCAGCTGACGCCATTACAGTTATGCCCTTAAACCCGGGATAACACAGATCTACCATGCATATGACTCGTCACTTCCGCGCTTCTTTGATCCGCAACAGACTCTCAACGGCTTAGATTCCCCCACTACCGCGGACCTGACCTAACACCTGGCTGTCAAGCGACAGCGATATGACCTAACTTGTGGCTGCGAACATTTGTAAATAGGTTGCTGGCACATTATTGGGCTGCACATGGGTGCAGATACCTACGCCTACGACTGATTGAGTTGCACTTGCTGTGCCTGGAGCCACAATATGGTACTGCTCGATCTCCACAATTGTGGCTACGCAGATGCGGCTAAAGTATGAGGCTAATACCTTGGAGCATATCAAGCTCGTGCCGGTGAATTATCCTCGATGAATGCAATTGCCAGTAGGCTGGCCGATCCGGCAACAAATAAATTGTCACTCGTTAGTGGGCCATTGTGTTAGCATACTGCCCTCCCGCGTATGGGTATCCACCCCTATTGCACTTCGTAGTGCTTTGTGTCACTGATGCGGTTTCACTTAAGCGAATAGGGGTAATCTCTAAGGTGTAACGAGTGTTTTGAATAAAAGGAACATAGGTATGATCTGGTTACAGGAAACTACTCGCCGTCCCCAGGAACTCGGCGTAGTTCTCTTTTCTCTGGCACAAGAGCCACAAGCTGTGCTGCATTCGAGGATTCCTGAAGAGACAATTCTTAGCTCGTGGTCTTTTCTAGGTATGCTCACCAAACGGAAGTGGGTCTACTACTCCCAAGCTCTAAGCTTCACCGATCGTAAACACTGATATGATTAACGCTCGAAACGTCTTGTACCTAAGGGTAGTAATACATACCCAGTGAGCGTAGAAAGACCTGAGCACACGGGTAAAATGTGAGATTGAATACCGTAGAGCTTGGTCCGCAGTATTTCCGCTCGTGACCTCTGCATTGTACGGCCGCATTGGCAAACAGACCCGCATCGCTTCAGTCCTTCTGCTACACTGTAGACTCATAACAACTAGTTATAGCGGAGAATACACGGGCCAGGTGGGAATACGACTTCTGCAAAGGCATGGAGTCCCGGTTTGACGAAGTCCATGTTCCGGGATCGCAGATGATGAGAGGCTGATTCGTTGGCACACCGGCCGGCACCAGCCTCGTGTCTGTTCATTAACGCCCGGTCGTTCGAAGCGCGATAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGTTTTATTCATTATAAATTGTCATCACAACTCATTCTTAGTAATAAATCCTGCTCGACAGATCCTGACGCAAGGGTCATGCGACCTATAATCCGATCAGGTGTCCGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGGCTTTGACTAGAAAGTGAGGGCAATTGTCCTTTCACCATTAAAGAGTGCCCGAAGATCATCTACCCGGCACCGGCCGTGTGCGTTAAGTAGAGTGCTAGTCGTCAAAGAATGTGCCGGCACTGCGCCCCCCTAACAGGAACGTAAGAAACTGCGTTTGGTATACTTCCCGTTACTCCACTTGTGCATCTAGTGTGACTCTTTAGCTGTGGAGCTTGGTTGAACGGGAATAATTGTTCCGTAGATGTAGTGCGTCGTTCGCGAAGATTTAACTTTAAGATATAGCTGCAAACAGTCCGTTATAGCGGGTGCGCCGACGGGTCGGCCACACACTCGTTAATGTATGAAAGAAGAGGGCTCATCAAAAATTGTCAGTTCCTGATGGTCGTTTGTCGCCAACTGCAGGCTACCTGGGATGGATTATGAAAATTTTCATATGAAAATATTTCCCATCCCTTAGAAGGTCTATGCAGGATGCCTCGTGAGCCTCGATGAAGTTCAAGCAGAGATTACGCGTGTAAACAGTCGGCGTATAAAGCATTAACTGTGGTCTCCGGTTGGCTTTATTGTCGATAGGTTAGGCAGAGAATGCTGATAACAAGGTGAATTACGCTCTAACATGCAAACTTCTCAAGTAGCATAATACAGTTACCGATTAGACAATCATAACTGGCCGTAGCGTAACTCAGAGTACCATTTTCGACGCGACCCTTACTAATGTCTTTACCATCCACAGTTCGGACGACCAGTCGACAACGCCCGGCACTGCACGCGAATCACGAGCTAGATCATTCTACTCGATGGGCGGGCCTTTTATTCTGAGGCTACAGAGGACGTTTGAAGATAGCACCCAGCGCGCGGCTTTACTGTCACCTTCACTGGGACCGTATGAACGTATCAGGGTCGGAGACGTCCACACCACGGAGGCTATGATCTCCGCTACTCCCGGCAGCGTGCAATCGTTACGCTGGCGAAATAGAACGTACACACTCAACTCAAGCAATGCTTGGTCTGTTTCCTACACAGTTCGATATCCCCATAGCAAGGGGACTTTGTAAATGGCTTCTAATACCCATGTGGGCCTTAAAAAAGAAGCCGACGCGATCGCTGCGTGTAGATCAACAAAAGCCCTAGTTTCGGGAAGATATCCTACATGGGGGTGCCCAGGTCGAGGCGGTCGCGATAGAGCATAAGCACCGTCCTGGCTCAGTCGCCAAATCTTAGATGGAGCGCGAATGGTCTAAGTACTGACGTGATGATCAAATTAGATCAGATAGCGCTCCCGGAAAAGGTATCACCCAATCCGCCCATCTACCAAGAATCTACCCGCCAGGGGTTTGATCAGCCGCGTTTGGCTGGCATACAATATTTGAAGTCTGCTGTCAACGACGTAATCATAAGCAGCTAAGTGATGATGGATTTAACATTGCCGTGGGTGATAAGGTTATTCACAAAACACCTGTCCTTTCCTCAATTTCGTCGCTCGCCATCCGCCATTTACAAGGCATAGCCATCGTACGAGTCTCAGGAAATTGACAGCTATCAAACTTAACAAAACTACAGCGCATCGTAAGGGCATATGATCCATCACTTGAAGAATACTCATGGTCGGAAGCTTGGAAATTGTTGAAGCGGAGATCACGGTGTCATTTACTCATAAGCACATGCAAGTCGGCGACGGTACTCCAACTGTATGGTAACTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTATTCAAACTGGAGTAGCTTGACCCTCCACCTGTCGACTAGCCGTAATTGAGGTATGGAGGCAAAATTCAGGGCACTACTGGGGCGTGGGCAGAAGTGTTATAGAAATCATGCACACAAACTGGACAGTCAATTTCTTTCTCGGGGTAGTAATACAGCCGTAAGCGGAGTATTAGTCAATGTACACTCTATCCTGCGTCAGACCTATCACTGGCAGAGTTTGCTTGTCGGCCACGCCATTGAGTGTAGTGTTTCTGAGTAAACTTTTATAATTCTGGATAGTGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGCGTCTGTTACGGACACGGACCTATCCCTGAAAACGAAATCAGGTTGCTGTGGAATCGGAAGGATTTCTATCGCTCATGGACCAGGGGCTCGCCAGCCGATCAAGTACGTAGTAGAGCTTACAACTCGATTTGAGCACCCAGAAAAAAGTAGCTCAGTCCACGACTCAGTTCGTGCGAATGTGTAAGGAAGGGTTTGGTCCAGGCCGACATATTTTCACCTTATACCAGTTTGACGAGGAGCGTCGTGTCTTGATCTCAAGGGCGGAATTCCACCTACCCACTTGCGACCTTACTGACGACAGCACATGTTAGTTCGAACGATGTTACACGACTATGACCAGCGATACGACCTCTTACGTCATTGATTTCGGCTGCAAAAATTTCCTTAATATTATCGAGGTTTTAAATGGCGAGGGTACGTTTAGAGTGAAACGCTGGCAGCGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATCAGTGATGTCATTGACAGCGCAGGGAATCGAACAGAGGGCCCAACATAAGGCATACCTCCTTCGGCGATTAACACCCCACTGGGTCGGTGCGAGGTGTAGGAGAGGATCTGATCCGTCAACTGAGATTAATCCCCCCTCGACGCGTGAATGATGCATCGGTAGTTACAATCTCTTTATGCCAGCTTTACGCGGAGTAAGTTGAGAAACTTCCGTCGGCCGCGCTTTAGTCCGGCCTGTGAATAACGGGTGTCGCTTGTTCATTATTCGCCCGCTCACATCCCTTTAGGTAGCTGTGTCTTCGTCTGAGACTGGTGCATTCGCTAACGGTTCCCTTCGGACAACACAAGGGTCGTCAATTATACGGTCTCAGCAAAAGGTTCCGGCATTGGTGAACGAGTCGGACGAGGCATCAATCCTGCACCCGGACCTACTCGACAAAAGAAGTGCTGGATTACGTTCTTGGGGCGAACTTGATCGTAGACGAGACTTGTCACCTGCTTGAGCCATGGTCTGAAGCAATGATTAGTACGGTTCGGGGGTGGAGGGCACTTATTAACATGATCAACCAGTTGAGCCCGGAGCTATAGTTCTCCAGAGCCAAGAACGGTGGGGCCTATAGTTCTACAATCGACTTCATGATTATGTGTATGCCACATTCGAGATGTTAACATGATAAGTCCTGAGATCAGGTACCTCGCTTCGGAGTTAGTGCATTACCTGGTTTGCACTACCAAATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAGAGTGGCTAAATTTGTGGACTCACCAGCCGCAGGGAGACTGTGAATGGCATGGGATGCCATTCAAATGACGCTTGTACGACCAGATGGAGATGGACGGATAGACCTCGGCCCGCACAGCTCTACAAAGTCCGTTTACGTTCAGCCCGAGACTTCGATCCATTACCAACAAATGGAGACAAACTCAAATACTCTGGTCTCCCATTGCATTGTCATAGCAACCTCCCTCGACCGTCCCAGTCGGAGACGCTGGCCTCTGGCATTCAGTTACTAACTGGGGCCAACCTGTCATACTCGGTATTGACGACGCCTAATTGCTGGCTACAAGGATGCTGACCTCTCTCATGCCCTTTGTTTCGTGTGGTCTCGTAATCGCTTCAACCTGATTTCGAAACTAGATGAGGCTTCGAACTTCTCCAAATTACCGCTACGCTCTCTGCACACCCAGCGTCCCGTAGTGGCCCGAATTTCACCAGCTAATATACTCACATGGTAGTTCTCCGCCGCCATGAAACATGTAGCTTTTGTGAAGAGGCAGCCGATTACGAGTTATTCGAGTGCTAGCATACTCAGTAGCCTCTGTGTGGGTTTGTAAGACACCTGTGAGGGTAGCACGAAATGAATGAATGAATGAATGAATG \ No newline at end of file diff --git a/wk6/pset/dna/sequences/17.txt b/wk6/pset/dna/sequences/17.txt new file mode 100644 index 0000000..9852dc3 --- /dev/null +++ b/wk6/pset/dna/sequences/17.txt @@ -0,0 +1 @@ +CTTTTGTACGCCTGATGCTTAGGCAGAGACGCGCCTATGGTTGCCGGTTACGGCGAGTTACTTGGAACTTATAGCCTCCGACGCCTGAAGAAGTATCCAAGGGTTTCGTGGGATTATCGCAACAGACGATCGGATCGCTCTATCGATGTGACGGTTATACGATACGCCTGGTAGGACCCACGCAACTTTATTCCGTATCGAATTAACTTAACTTGTCAGACAGCGATTCGGGAGGTAATCTTGGGCTTCCACTTAATTGATCATCGGGGCTCTCACAACCGAAATCCGGATTTACTTGGTGTTACGCTCACTGCCAACTCCTTTTTTGTCTTAATAGTGGCTATGAAGGAATAGTAACAGGGCTTGGTTAGCCTTCATCCAACCTTAGTTTCTAGCCGACAGGCGAATAAAGCCTACAACATGCCTGCAAAGGAGGACCTGTGGAACGGGAAATTTTTCCGAATTAAAATTAACGAAAGTAAGGTGTTAGTGCGTATGGACGCCAACCATCTACGCCTTTGGAAATAACACAAGGGGACTACACGCTAGACTTGACCCTAGAATTCACCGAAGGTAGCACCCTCCCATGATCCCCTAGCAACGTACTGCCCTAGAGAAGTGGCAGACCTGCACTCCTCGGGGGATATGCTTAGACCGTAGTCTTGGTAACACGCTACATAAAGCCAGGTTGCGCCAAAAGAACGTTTGAACTGGAAATCCTGTTCCGACTTCAACTACGCTGCTGAAGTTGAGATGATATTCCTAGTATCTTCCAACTCATATGTCGTGGACTCTGCGGCCACTGACGAATAGAGCCAGGCACCTCTACCACACGTTGTATACCGAACCACAAGACTCAAGCACCGTCCCTAATGTTCAGATCTCCTCGTGCCGAGTATCCGAAAGTCGTTACGCTCATTCTGAATTTATCTATCTATCTATCTATCAGAGTCTGTGCTATTTAGCCTGTTCTGTCGACGCTCGATTCACCCATGTTCGCGCTAGCGGAGATGTTCTTAGAGTTAGATGCTGACAGCCCCCAAGGCACCAATTTCGTTATGAAAGTATACGGCACTCGTTGACGGCTCTCGCGATCTGCATGCATTGTGCGCTAGGGCAGTCTAGCAGGTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGAGGGCCCTAGAGCGGAGTACCAACTAATTCAACAGGCGATAACTCAAGTGCTAATACTCCACTCCAAGAACGAGGGAATGTGAGATTGTTGTACTATCAGCAGTATGTGCGGCCAACAAGAGCCACAACTCAAGCTACTAAATTCTTGTAGGAGTATGCGCACCACCTGTGTGGGGATAGTACATCTATGCTATTTGGGTCCAGCGTGCTGTCTGGCTGGGTTGTGATCTTACAGGGAGTAGGTGAAGCGACAGTAATAGGTGAATACGATTTACGGTCTTGTCGGTCAACAAAAGGGGCGGGTACCGGAACCCTGAGGAGCTCGGCTACACGGCTCATACTACTAGCACCCTAGAAATTCACTTCAGTCTTATTGCGGGTCGGCCATCGTCTTCTAACTAGGATACGCGTACGTCTCGGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGTATACTCATGTCGTGAACTCACCGAACTATACGTAGCCTCTAATCTTAGAAACATAGAACATTCGACGAAATGCGTTTGGAGGCGTCGACTAAGCCGGCCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCTGGGATAAGATTTGCCAACGTGCGGTATCGCCTGAATCACTTCTAGCCGGGGACCGCTTCCCGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGCTAGGTTAGTCGGAACGTCTTTCTAGTTATGGCACATAGTTATTATGTAGGATACCGAAGCGCAAATACACTTAGCTTTGACCTATATCCGGCCATGGTTGATACTCGATAGCCTTTTTTGAGAAGAACCCGCGGTAGTTCCCCCTCATCCGCGTGACCGGTAGCATGTAGCCTCCGCGTACCTTACTTTCTATATAGTCACTTGTAAATAATACGACGCGATGTCCCGCCATTGCTTATGGAATGAGGTAGTAAAAGGTATTAGCCGGGCTAGTACGAATTTGAGATGATAGGGTCCGTGTGCTTCTAGCTCTCGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTACTTGCCGTCATTGCAAACGTTGCACAGCTCATGGCGGCCAGCAAATTACGCAAGACTTCTTCCGCGAGTGCTATCTTGCTGAACTTAACGACCGATATGATAGATCCATCGCATTAGTGCTGCGACAATACGCGTCGGCGTACCTTCGTCTAATTGTAAACTACAGCCGACTACCAAAGATGTACAAGCAGGCTGCCGCAGTGAGTTTCACGCAGATAGTCTAGGTCATGTGCCAAGGAATGCTTAACGATCAGTGTCAGGTTGCCGTTAGCCCCGTTGATCGAAGAATCTCTGGGATAAATTTTATACCGACCATTCTCAGCGTCCTACTCTAGATACGTCCCGAACCGATGATCCCATCAATTGCATTATGGAGCGTCCCTCGAATGTGAGGAGCTCCATGTCGACATAGGAAGACTTATATTACTGATCAGTAACGACCAGCTTCGGTATGAAAACCTGACCGAGTAGTGCCAGAATGTAGCGCCCATTTTGGGGTGAATCACCTTCGTTAAGTTGATTATTGTTTATCTGGGGTTTTCCTACGTAATTGCGCCGATGTTGCAGACATTTTGCACGGAAATACCTCTGCGCCTAAAGCCATATCTTACATACAGTCGTGGAGGCGGGTAAGGGGGATGGTAGGGCAGGGCTGGGTCTCTGTACGGAGCTGCCCGAGGGCGACCCGACACGCGGAGAGCCCATCATTGACGCTGTATTAGTTAGGTGTATGTTCGTCGAGCTGGATAGGAGGGGAATGTATATCCGAGCCTACAGTGAACTAAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTTAGAATTAAGGCATGGGGATTTAACAAAGGGAGGGCGTTGCACTTGTCAATCTGACTTGCAAGTCTTGGGAGACTCTCTCGGCCTATCATCCCCGGGGGTCAGCTAACTTCTCTGCTGATGGCGCTTCTAGTATTTTTCACGTGCGGGACACACGACGTTTGACGGGGAAAGTGTTAGAGTGGTGGACCCTCCAACGTATGTTCATCTATGTTCGGTGGCTTGTCATTTCCTTGCAGTGCTGTTTGCCTTAAGTACCAACGCCAGGGCTTAACGGGTAGGCTCCGTAATTTCCACCAGAGTTCACCTAATCCTGTCTCTTAACAGTGGCTTATTCGCTAACGGGACGGCTGGTACACTCATGTTGGGCTCAATCACACGGTTGCCCCTGGGGCGCCGAACGCGGTCGCGACAAAGAAACATCCTCGCCCCCGCTCCAGGAAGTAAACTTTAGTCTCCTTCCTAAGCCAGCTCACTAAGGTGGCAATAGCTACATACGCACGACCTCTACCTCCTGCACGGGGGCCCAGCATATCTTAGCGAATCTCCCGCCATGCAGTAGCAGAGAATTTTCAGACGAATTGACACGGACACTTCCACTCTACGTAATTGAACATGCTGTCCCTTGCAAGCTTCGCCTCCCACTGGAAGGTAAGCCGCGAGTTAAGCCAGAAGTAAATTCTGTCAGACTCAGATTCGATCTCCGTAGTCTTGGGTGTGTTCCGTCGCACGGCGAAATACGGAAACTAAGGTTAGACTAGCCTGGATAACTTGCACAGTGGAAAATAGAGCAACTATGTGGTGAGCCTATGCTAACAAGGACGATTGAACACGGGGGATGGGTCACGCCCGAGCATTTTTCAGTATTAATCTCGCTATAACGTCTTGACCTGATTTCGGCACACATATTATGCCTCGACCTCTACTCGCAAGAACTACCTCCATTAAGCACGCAACGGCCGCGAAAATAAGAGTACTGGCGGGGGAACCATTTTTACATCTACTGTCGCCCAAGGAACCGTCCCCACCGAGAGCGTTTCGTTCCGAGAGTCCTTCTTGGTTGAGGAGGTAGCCGTTCGCGGCTTGTCAGTCATTTGCCGGTCCTCGTCACTTAGTTGGACACCTAATGGGGTGATCATACCTCGCGAACAGGGGGAGATCTATAAGAACACGCTATCATTGATACGCCGTTCCAAATAGTTTTGAGCTCTCCTTCCTTTCTATCGAATTCGCTTTAGCCATCTTCCGACGTGCCACGGTACGGCGTGGTCTTCAAACATAGTGTACGCTTGGCCCAACACGTACGTTTGTAACGAGCCAGGAGGCCAAGTTGATTTTCAATTATATCTAATCCATTCGATCGGGGGCCCGACGACCTCGCGCCGCATTCTGCGCTCCGTACCAACCCTAGGGACGGTGAGGCCTATTCGCTCTTTCTTAATCTGTTTGATTAGATTTAGTGCTTACAGGGCTGGACAACAGCGCTTTCCACCGTACCTTTTGTAACATGCTATCTCCTAGAAAAAGCTGTTAGAAGATCCGGACCCACGCTACCAGGGGGGGAAACGATCATCATGGACTGATTTGGGATCTTAGCTCCCTGCTTGCTCGTACGATAACCATTGGGAATTTAGTCCT \ No newline at end of file diff --git a/wk6/pset/dna/sequences/18.txt b/wk6/pset/dna/sequences/18.txt new file mode 100644 index 0000000..74f114b --- /dev/null +++ b/wk6/pset/dna/sequences/18.txt @@ -0,0 +1 @@ +TTACTTCATGAGCAGGAAGGAGTTATGGATCGACGATATGTTGGTCTTAATCCAGTAAGCATCTAACTTTAGTCAATCATAAGTGCCAGTGGACTTCAGTAATAGACACTCTTTTACCAACGGGCAGAATGAATGAGCTGAGTCACCCTACCACCCCGCTGGGCACTTGCGATGCTTTACTCGCCGGTGGAGAATGAAGCAACGTCTGGTGATCTATCACATCTATCTCGTCAGTTATTGTATATTGGTCTCTATATATGTAAGCTTACAACGCAATTCTGCCTGAGGCGACCGGGCAACGCCGGTAAGTTAACGCACTTAAGCATTCTACAACTTCGCGCGGCGCCACGTGGCAGGCTGCGAGAAGCTCAGTAATATATCAAAGTGTATGCATATACGAGCTGCTAGAGGCTTCTTTATTGTGGGGAAGTAGGGACTCAGCTGACTCTATACCCGGTAGTTTACCGAGACGACCTACCCCCCTGGAAGTACCCTATGACTGATAATCAGAGGCATCCATCATGTCCGACGCCGGATCGGTGGATCGGAAGCCCCGGAGAGAACGTGTAGGAAAGTGTTTTAACTAAACGTACGGTACGCCTCGCCGACGGATCCTACAGCTACGCCTGGAGGCCGCAAACTACGTATGAAGCCAGAGTTAGCCCGAAACAAAATGATCTCTCCCTGAGTAAAGGTCCAAACCATGCAACATTTCGGCCAGCTTCGGGACAAGGATTGGACTAGGCGTGCAGCCGCTGTTTGTTGGTTAGCGCTTCATAGGTGCTAGCCGCTCGTAGAAATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTACAGACATTCAAGCCCGGTTTATAACCGTGTGGTGGGAACGATCGTCGAGAAAGCAGCTTCCTATGCGCCAACTATGTGTGCGCGGCGGGCCTAGACGTAGGAGCAAGAAGACTATCCTCAGAACCGGAGGGTACCGTCCACCCAGCGTTCGTGGTGCGGTAACATTTGTGTTTCCGACGTGAATAGCACTCCTAGTCCATCGTTAGTGACACCACTTTGCCCTTTGCAACTGCCCTGTTGCTCCGATGGTCTGGGTCACTACACTTGGTCTTAGGCCGATCTGTCGCTCGCGTCCTATATGGCCGAGAGCTACCCACGCACTTATACGTGGACGGGCGTTTACGGAAGTTATTTACGGCCACTCCCATGGAGCCTCATCTCACCTCGTTCACCTAAGCAGAAATGGTTATTATGGGACACGGAAGGTCTCGTGCCTTGCTACACTCGGCAGTAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAACGGGGTTTCTTAACGAAGAAGGCTCTGCATCCCTGTAGAATATTGTATTCTGCCATGCATAGAGCCAGTCCACGATAACATGTTAGACCAAGGCTGACAGACGTATCTTAACCAATCTGTGCCCCATGCCAAGCCCACACCGCACCAAAAGGTGGTACGATTCTAACATCATGTACGTTCGTAGCTCGCCTATCACTTGCCAGAAGGGAGCATCCGACCACACATACAAGGTCTAACATTCGGTGCGGGGGTGATCAAGAGTGAGTACTGTCGTGATATCTTTAAGTGGGAGCTATAGATAGTTTATAGCGAGAGTGTGGATGTAGGGTAATCCCCAATTCGGAGACGCGGTAAACTATTACCTATCGCCTTACTTCTGTAGCAGGTTAAACCTCGGGCTCTCGGCAGTCTCCGCGGACTCAACGATCCCGCTGCGACCGTCTATTAGTATTGGCTTTCCAAAAAATTTATCAGTACATATGAGAATAGTTCGTTGTAGTGCCTCGCATACCCTTCACCGTTAAATTAGGTTCACTTACGTGTGTTTGACGCCCTCAAATGTAGCCGGCGCTGGCTGTAGGACCTTGCGGGTATAGTGGCGCGAGTAGAAATCGGTGACCAGAGCAGGAGTCATACACGCAAACCCCGGGGAGAGAATTGTACGGTGCAGCGTTAATGCCGCAGCACGACAATCCTATTGTGACCGGCGACAGTGGGGTATAGGGGACTGTACGTGCGGTTGAAAAGTTCATGCCTGATAGAGGCTGCGCCCGCGTTGTTGGATTCCATGACAAGTACACCAACGTGTTTGGGGTGGGGTCGCATCGGGGCCCATGAAATCGCATCGACCCGTCTCACAACTCGATAGCTGATATAGCGATTTACTTTTTCAGTCCGGATCTATACTTGAGTTCGCATCTCGGAGACACTTGGCCAGCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATATCTATCTATCTATCTATCGCGAGTTATTAAGCGTGACATCAGTTGGCTCCTGCCGGTTTGGTGTAGGAAGTCACACATTTTCACCGCCCGGCCTCGACTGTTATACGACGCGAAGTTGGGTCGGCTCATATGCAGAGAGTCTATAACCTGTCAAACTCTGACATAGATACCATTAGACGTGCATCTTTAGGAGGAACCCAACTTTGGGAATTGGACACACCTACTATTCAACGGGAGACACGGGACACTTACTAATATAACCTGTACTCGACGAACATCCCAGTGCTTCTCTAACCCGCGCCGGCAGAAAGATTTTTCAATTCAACGTCTTGCACCACAGCACCAGCGCCGATTTAAGTGTCGTCTCGCCGACCAGTGTGTACTGGCAGTGGCGTCGGGTTGAGCTCGTACTCACCATATATTAGAATGGGATGTAACTACCCTGCTTCAGGGCACGATGCCCTTGGACCCTGTCTGCAGTCAGTTGTTAAATTCGCTTAGCAGTTGCATTTAAGAATAAGTCGCACTCCTACTTATCGTTGGTGAGAGCTCAGTTCATGGAAGCCCCACTCCATCCGGGTAGAATGCGGTGACGAACTTCAGACGGTACCTGATTGTCACTAACCGTAACAGAAGGGAAAACTGACTACCAGGATACGATCCCCGCGTGGCCTTCTGGGAAAGACTTGCGTCGGACTCCTAGGGTTCTCATATAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCTTGACAGAAGAGAGTAGACGTTTCGCTCGTTAAAGGCGCTGCAGTCATTCTCGTACGTCCGACGGTTAGTGCGCAGGTTCATGTCTTCTTAGTGCGAAGGAAGCCCACGGTGTCAGGGTCAACAACGCTAGCGCCTCATAATGGAAATAGCTGGATCAAAAAAAGGCGTGTGGCTCCCTGTAGCACATCCATGGTATAACTGCACTGTCGCGGACCGCGTTTCTCCACTTACCGACCCGGTCTCGTCTTTATTGTTACAGTTCGCCGAGCTCTCTGATACATTGCTCTGCACTCCCAAGGGTGTGTTCCATGGCGACATGGATAGGATCGAACTTTTTATGACGATATAAAGATGTTTTTGACCCAAGTTTAGTAAGGTGCAACGTGCACTACCATCGAGATCCGTAGCTTTAGACGAGTCCGGGCGGCACGAAATCTGATTCCCCCACGCATGTCCACATGGCGTTGCCGAATTCTAATGGGCGGAGAAATTTCCAGTCCGGCAATCTCCGCAGGGCCTTCCAGAACCCACAGATTCCTATACGCAATAATACCCCGTAAGCAGACGGAGGCCTTAGTCTGTCAGTGAATATAGCCCCCGAGCGTTCGGACTTAGGCCGGATATGGTCGTGGATACAATGCATCCTTTGAGGCTAAGATTGGCACACTGGTGCCAACTCGAATTAAGGGCGCGCACTTTGTTGCATACGGAGTTAATCGTCCCGCAATAGTACCATGCAGCTGTATTTATCTGTCTCCGCCCAAGCGTTGTTGTTTTCGCTTGGTTTGAGTTTCCTGTAAGATCAGGATCCCGCTTGATCAGTGTTGTCAGAGAAGACTACCCTGTAGTGTTCCGAGGTTTCGGGACTGCTGCGAAAGGTCCTAGGAGGATGACAGAGTTTTCAATTCGCATCTTCCTTGGGTGTGGTTGTTAGTACTTATATGAGCGAGCGCAGTCCAGCTCCCGACTGATGGAGCGCGGCACACATCAATACTTCGCATTAATCTCTTGAATATACACGGGTGTGGAACACAAAATATGCTCATAACAAGTTGTTTCAGATAATGTAGGAGCCCGCGACGCGCTCATGCAGGCCAGCAAAGATTCAGGCTTTGTTAGCCCGTGGGAGAGTGCAAACAAAGGCTTTGATCTACGATAAGGAACTAAATCGAGACTACTCATATTGTCCTAAATTTAGACCCATCAGGACGGAGAGGGAGAGGCGTCCATCTGACCTAGGCGAATAGGCATAATTTTTCCTGGGAGATATCTCGCCGGCTCAAATGGTCACTCACCCCGGATGTTTCAGTTATGGCCCTAAGATTCAGCAGCATACCCGGGGAGGAAGAGTGGCGGTCAATCCTAAGCCGACGGTCCGTGTTCCATAGGCCCACCTGTTCCCATCCCAGCGGAAAGGCCTCTCGATTCAGTAGTGAGGCGTCGTTCAGGATCACCGCAGAGGTCAGAACATAATGACGACGATGATGCAATGTTAATGGCTTGCTCTAAACCCATGAGTGTAGTCAGATCGGCCACATGCCCGCGGATTGTCGCGCATCTAGTGATTCATTGAACGCGACCTCCAGCCCCGTGATCAGTAGTTGCCATGGACTTAATTCAGATCAAAACCCGTCACCACTTGTTAAGACTGTGACAGGCCAGACTCTGTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTCTGGCAAATTATAGCGGCACGGCATAGGCGGAAAACCCTAATGAGAGGGGGATCTTTCGTTAGTTGAGATTGGATGGCTTGTGCCGGCTTTCAGCCGCCCGCTTATATTCTATGGCACGTCAGCGTAGGACTCCATCATGCTTTGGCATTTGATGGGGGGTTCTCGCGTCGCAGGTTACTCCCAGCACGGATGATTCTCGCCCGGGTGCGCTGAGCGAGGCGAGACGCAGTTACCAGTTGCGCAACTTCATTGTGAACATATGTCGGCTAGGACTCTACTACTGGGAATCTCGTTTTGCCCAAGTGAATCGAGGAGTATCCGAGTAGATGGTCGCTCAAAGGGCAACCACAGCATGTGTGTTTATGACGGTGTGGAATACAGATGCACGGGTCGTTCCAAATCAAATAATCGGAATACTCTTATACTCACCTGCGCCAGGCAGAAATATGAATGCATTGAAGTAGCTGATAGACTGCTTCGGCCAACACTTTCGATCTGATAGAAGATTGATTAATGGCGACCCGGGAGGCAACCGAATAACAACTTTCACTGTTTCGTTCTTGTCATGATCTTTGATATCGTCCCGATCATGCCAGCGCGTACTCACCTCTGGCAACCGGCTATACCCACATTTCCCCGTAGGGGCAAACTGAGTCTAGATCAAACACAACAGGTCCCTATATACGATTTCCGGGGCATATAGATTAGACGCGTGGAGAAGGGGTCAGCGCGTTTCAGCACGGACCACAGGCGCCCCTAGCATTACTGCAAGGCTGTGTCTGACCGGATTGCTAGTAATCGCAGCAGCTACGAGGTTGTACTAGCTAGCCGAGTCCTGTCGAAGTCATATTATAGAACTCTAAAGTCACCTACAGTCCTACTATTAGAGAGCTTCCTGCTCT \ No newline at end of file diff --git a/wk6/pset/dna/sequences/19.txt b/wk6/pset/dna/sequences/19.txt new file mode 100644 index 0000000..bab96e2 --- /dev/null +++ b/wk6/pset/dna/sequences/19.txt @@ -0,0 +1 @@ +GTACTCACTGCTCTTCTGTCCGAGGGCTCTAGTACAATTAATTCCGGGGTTTGGTTTAATCAGGCTTCGGTATTTCAGGCCACTTAGCGTCTGCAGTTTTCGTAGCAGTTATCGTTAACGACTCCGACTGGCCCGCGCTCCTTAGAAATGTTGACGACGTTTGTTGTGAAATAGGAGTGCGCTTCATGGTCTATTGATAGATAGGACTTAACGTGCGATTCCGCAACGAGGATGACCAGTTTTAGGCCCTGCGCTCGCTGCCCTTATGTAGCAGTATATTACGAATTCTCGGAGTTGAGACAATAAATGCAGGACCACTGAGGCCAACCAGTTCTTCGGCCCCATAGGTGGAGTCATTCCGAAGTGAACCCTACATCTCTACTAGGGGTTGCAAGTTCGCCAAGTAGAACCGTTTGCATCACGAATCGCTTTCTGAAAAGACCGACATTCTGCTCAGACCGTGACACGACTCCGGCCGGCTGATTAGGACATCGCGGTCTCGGTATTCCAGCAAGATTGTTTGACTTTCGAGTTAGGGAAACAATGCTACGCTACTGACACCCCACGATCACCGATTTCAATATTCCCTCCATACGAGGAATGCAAGCGGGCTCAATCAGTAATTGAGAAATCGGATCCTTCTCCTCGTGGATCCATTGCCTATAATCGATGCCGAAATACCACAATTACGAAGAGCCTTGGAGACAGATGCTCAAGATGTCGTTAAGGTATCTTATTGGCATTGTCTATCGTGATGCCGACATAGGACGCGTCGAATCCATAACGATCCGCGAGGCTGTCTCTAGAAGAGGACAGAGCTTGTTGGCGCTAGCTTTCGGGGCATTGGGACCTCCTGCTCGATCATTCTCGGAAATCGATACCTACGCACAACCGAGGGCGGACGCGTGGCGCTGCGTGTCGTCCAGGTGGAAATTAGGTTCGGCATTGAGTCGATGTACTCGCTAGGTTCGTCGTCCCAATCCCTCTGTGGAGTGGCTAAAGCCTGGACCAGGCGCCAGCCTGTTGATAAGATCCTTTACCACCGTAAGGAAGCTGACCGTTGATTATGGTGGGTTGTATCTTGAGTGCTGGCGAGGCTGTAGCCTCGCGATACACGATAGATAGATAGATAGATAAAAAGTTGCACGAAGAATCAAGGCGCGAGAACGATTGATGAAACTCGCCGCACTACATAGATCTATAACAGAACATCAAGGCTAGTCCTTGCCATGAGATCCTTTCGTCTGGGCTTCCCGATGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACTGGGGGATCCCAGTCCTCCTTCATCACCTCCTTGTTTGCGTTTGTCCCCGATGACGCACCGGTCGGGCATTTAGCTCCGGCGCTACCGGCGGTTCGTTTTGGTAGTCCGCTTTTTCCTCTTATCACCAGCGGCTAGACCCTATAGGCTGATGAGATCGCACTCACTCCACTGCCTAAACACCAACTGAAGCTTTTGTCACGTTGTGGGCCTCTATCGAGGCGCCCCCGGATGAAATCTACCTGGAAGATCGCACCGCCCGGGCGTTGTTAGCACACCGTTCAATATACGTGGTCATTGAGTAACCCAAGACGGTTGGGCTCCATGTACTATACGCCTTTCTTGGGTGGCTACTCTTGTCAGTACTCCAAGGATATAAGCACCTGACGCTTACGCAGCTTTCGCACTACCACGGTTATGTGGTAGTAGATACTCTCCGATAGAGGCAGCCATATCGTAATCAACCCTAATATTCACTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGGGCGTTTTATACCGTGCATCTCAAATAAGCTAAGGCACCGTGGCGATAGCGGGCGATGGGCGGGTCAACTACTTCCAAATGAGTTGACTCTCTCCCATGGTAAAATCTTTGTAGTTCATCGCTTCTCCCTCGAGCACAACTGGGCATATGTCCGGCCGACACGTTGACGTATTCGTGATACGGGCCGGTTGCCTGAACGTATCAGGAGAATCTTTTGAAAAGACTTAAGAGCCAGAGGATAGGAGCAAACCGACGAAACCCGCAGAGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTAAGTTCCCCGGACCCATGAATGTCCGCATAGGTAGTTGAACAAGAACGATATTGCCCGGCCTTCTCCGGGTCGAGGCGTTTGGCTATGGCGACTATCGTAGAAATTCGCGGAATTGAAGCCTCAATGAGGCTAACCACGGCATTTAATTGTACTGACGGGTTGTTATAACTCTTCGCCAATGGTGCGACAACTTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGCGGCCGAGTCAAATGTCGCTACCGCGGTGCCTTAAGGTGCGTCCCCGAATGCCCGAGTGTATCGGCGAGAGCCCTCAATCCACTCTCGATTCTTGTTTTTTGGTGAAGCTACGGCTACCTACTAGGTAATTGACCGACCCTAGCTAACGCAAACCGATGCTCATCAGGGTCCTTCGTATAATCCCGGCGTGAATTACGCGCCTTAGTCCGGTTGCGTAGTGTTGTGGGCTCAACACTATAACTACAAGAAATGGTTGACAGTTAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCGTAGCAAGCGTGCGAAATTTTTGTGCAAGTTACGCGTTGTGAGAAGGCCCACGCCGCCTTTTACTATCAGCTATTCTGGGAGACGACGCCATATGCTTATGTACCGTTCCAGTTGTCTAAGATGGCGATGCGGTTGGGGCCTACAGGCCACCGCGACTTCCACTCACTGATTCACTTCCGGCCTGCCCGGGCGAACGGGGCACGCAAGTTTGGGTCACAAAATATTGGTGTCGGTGAATGAGGAGCAATCGTCTCAACATAAATTTCCAACTCAGCGAGCTCGGGGTCAACATCTTCGAGGAGTTCAATCTCCTCGCCTAGCATCGCCCTTGGCATTCCACCGCTTCGTTGACCTGTGGATTCTGTAGATCTATGTGGGGATTGCCGCCTAGGGCAGTGAATCCTTTCTCTGTATCATACGACATCTTGCCGAGGAGTTGTAATGCTAATGATCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTATTCCAGTCTAATCGATCTTGGGGGACGCCTTTTTTCCTGAGAATCGAATTATGGCTTGACAGCCCCGTCCTGAACGCATCCTGACACGAGTATCTGCGAGAATCGCGTGTTTCTTATATGTTCGACTTGACCTGAGTGGTCTTCAGACGAAGGAAGCCGATCAGGTCGGCTACAGCCGATACGATTCACAAGTCGCTGGCTATCGTACATCAGCTGGACGTTTCCTGCACCGGGCGCTTGATAATTTAACCGATCAGGGGCGCTACTGGCTTCTGATTATACCGAGACATTTACCGATAAGAGGAGAATCATGTGAGCCATTAGTAGGACTGGTAGATCTTTGATGCCCCAGTTATGGCGCCCGGAAATGTCGAATAAGCGCACGCCCATTTACCGAAGGAGATGAAAGCTGCCGCTTGCCAGTTTACGGAAAAGATCGTCGCCTCCTAACTTAGCTTTCAGGCGTTCCGCTTCTAAATCGCGCACATACCTGCTTAAAACCTACTACTGGGGGAAACTTGGCGCGACGCCAGGTTGGATGTCGCTAAGGCCATGGCAGCGTTATTTAAAATAGTGGTCTTTTGACAGGCATGTGGGAGAACCCTTGACTAACCCGAAGACGACGGGACTCTCAGAAAGTGATCGAAGTTCGACCCGATACGCGTCAAAGCTGTTCGTACGATTTAAATAGTCTTGAAACCCGCGACTACACTGTCTGCATGATTTGCCTTTGACGACTCATAGCCTGGGAGTGAAGTGCTTATACCATCCGCTCGCCCGGTAAATTCAGATTATTTCTGACTTGGGCATAATTTTCCTTGGAGTAGTACGCCTTCACGGCGAGACCTCTGGAAAATATAGACAGACGCTCCAGTAACGCCCTAAAGCGGAATCCCTTTTGATGAAATAAGAATGAAGTGGTGGACGCCACTTTTGATTGTCCCTTAACAACTATTCATTACTGTCAGTTATGCAGTCGTACAAAAGACCTCACATTTACAGAAAGACTGAAAGTACCTGAAGTTCACTGCTCGTGGTCTGGGTCTTGAAGGGCACCTCCCACTGAATGCTTGCATATCAACCCTGTCCTCTACATCGCCGAGGCACGAACAACGCGCCAGGTCCCCAACGCGGGCTGGGGAAGTACAAGAGTCACTTCCGAGTATAGACCGAAACAGCGTGCCTGCTCCACTGGCCCGTACCTTAGCTGGTGCAACATCGAATCTCGTGCGTCGCTTTATCAATGTGCTACTTTGCATCACTGTGGGCCCTAGCCGCTTTGTCGCTAGCTATATAGCTGTCGGCCCCCTACAGCGAATCCTTTTGGTATATACACTTTTGGCTAGTTATTTAACAACCGCCACCTATAGGCCCCGGGGGAGAAGTCGATTAGCTTAACTTTAAATTACCCCTAGACCGCAAAGCTTTCGTTTGGGAGGAAGATCCCTACGCTAGATCGATAACACCATGAGCATACGGGTGAATGAACAAGAGTATTTTTTCCATTGCAGCCTCCACCTGGCGTTTGCGCCACAACGGAGCCATAGCGCATCTTAACCATTAAACACTCAGCGAGTAGGCAAGTAGACGATATATAGCAATCTGAATGCACGGTTTACAGTATCGTATCGACCCCTCGGTTGAGCCAGTTGTAGGGGCACACGGCCCAGAATTCTATAGTGAGTTAATAGACGAGAGTACTGACTGAAAATGGAAGGCACCTAGAAATGGGTTACATGGCCAGCTGTTGCCTTTGATTTTCTAACATCGACCTAGGGAAAGACTGCTGGTTGGCAGCCCAGGCGACACCCTTTGTGCGGTTTCCTAAGAAGGTACAGTGAGAGGCTCTTTTCGATGAACACCGGTAATGGCGAAGCGCTAACACCATGCCGAATCATTGGAGCCAACACGTTATTGTCTAGCGCACGGTGACGTAATTCGCGGGAGTGCACAATTGTGTACTTAAAGAATTGAAGGCCGTCCTTAGGGGAATAACTAAATCACCTTATACTTGTTCCACGAAAGCGACGCTTAGCGAGAATTGATCGTGACCCCCAATCCCAGTCTCTAGGTAGAGCTCACCCCATATGCCAGTTTATCGAATGATACCACCGTACGAAACACCGACCGTTTGACCTAGGACGGATCTAGAAGGTTCACCCTAACGTAGGCAAACGGATTGAGTGTGCTAACGGTAGATGGGCGATTCTGAGCAGGGGTAGTGGGGTTGGCTATTTACTAATTATATTACTTGAAAGCGTGAGCGATGCAAATTGGATCGTCCAGTCTTCAGGGTGCATTATATACGTTATACGTGCTGTCCGACACCCTATCTGGCCTTCATCGGACTGTGGCTTTGTGAGACGTCGCGCGCTTTTATATCGACATGATCCACCCACACT \ No newline at end of file diff --git a/wk6/pset/dna/sequences/2.txt b/wk6/pset/dna/sequences/2.txt new file mode 100644 index 0000000..51b28c0 --- /dev/null +++ b/wk6/pset/dna/sequences/2.txt @@ -0,0 +1 @@ +CGCAAAGACTTTATTGCGCCCACAGTGGCTTTTGTCTACTGATTCCATAGATAATGACAAATGTTCAAGGGGTTCTGGTACTTAGTCCGATCTCAGTGCGACTCGGGGGCGAACGTCGTGGTTATAAACTCGTCCAGATGCCGGCGCCAAACAAATATGATCCCATTGTGCACCCCCACTGGTCAGAACTCTCGGTGCTTAAGCGATACACGCGTCCGTGAGCATTCAACACCCAACTACTAGTCCGGTAATCTGAATGCACACGTGGCCCGGGTTACCGGGATGCCGAAAGAAAGAAAG diff --git a/wk6/pset/dna/sequences/20.txt b/wk6/pset/dna/sequences/20.txt new file mode 100644 index 0000000..690ee68 --- /dev/null +++ b/wk6/pset/dna/sequences/20.txt @@ -0,0 +1 @@ +AATCCTGGTTGGACATACCGTTTTCCACACAAATGCCCCAGACACTGTACGGAGACCCTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTAAGAACCGGGGTTTTGGCTGATTCACCGAGTCAACCTAAGACACTAGTTAAACATGTTTGTCGATTATATCACCTTTCATATATTCCGAGCGACACTTTTCAATGCTATATGGTGCTTATTCCTGCTTACCATTTTCGGACCCAGGCCTCAACTTTTGCTTGTACGACATGAAAGGTGCAGCTCTACTTGGATAAGGTGTACTACCTAGCTTACTCGCACCGGACCATTAGCTATTACAGGGTTTGGATAGTTACGTGATGATCGAGGCAGACACCGTAAGACTCTTACGCGCCCGACGGTCCCCGTTAATGATGACAGTGACGAAAGGATTGAGAGGCGCGTCAGACCCCTGTTCCCATATTGTATGTTGTCGTTGGTACGGGCGCCTTACGGAGTAAGGTGTTAGGCAGGAATGGCCAAAGGTTGGTGAACCTGAATCATGGTTGACACGCAGCTCTCTACATTTATGGGCGTATTCCTATTCGCGACTACTACAACTCTTCGGCCGCCGGTAACCGTACGGTGGCTAGATGCCGCTCATACAAAGTATGCGAGCCGTATTCAGAGTATAATGACCTGAAGGAGTACATGAGGGTCATGGTCCGCAGGGACTCCCTGTCATATGCTGAGATGGAGCCATAATCCCTGCCAGCCGTGTGGACTCAGGCATTCCTGTATTAAGCACTCTAGCCCTCGTGAATGCTTGGAAGAGTCACCCAAGGAATCGATTATCACAGGTTGGGAGAGGATGTTTTTCAAGGCCCTGAAAATTTGAAGGGGCTATTGACTGCGGCGTTACAACCAAAGAGATGACGGAACCATTGCTTCCGTCATGCTGGTGTCCCTGTGCGACCCACCGTGTTTGCTCCAATAAGTGGAAGGGTAAATTGATTACTACCGGTTTCATAGGAAGTTCGAGGTGCACGGTTGAGTAGCATTAGAGCTTCGAGCCAGGTTACCATAGTTATCTTTATGGGGCACTCGCCCTGATGTTTACGCCAGGGTTTAGCTTTGTGATCCGTTAGGGGGTTACCTACGACGCAGCAATTAGCGGGTGTCGCAGGTGTGTAGTTTGTGGCACCAAGCCAGCGGGCTTTACTTAACCAACCCTGGGAAGATCACTTCATCCGAATATGAGATCGCCCAACGCTAATACGCCGAAATGGGAACTGAAGGTCTTAGACTAGCTCACGAACCGTATACCTTAAGTTCCCTAAGCGGACGAATTTTTACTAAGTAAGGATTGCAGGAATATGGAAATCATCCGTACGTGCTTTGACGACCCAAAAAGAGGATCAATGGTATCTACCCAAAGCGTTATTCCTAGTACCAGGAGCCTAAATCATTTATAAAAAAATGCAACCTTTACCGTGGAGCGAAGGAAACTCTACTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGGTGTCAACCGTAGCCTGGTAGATGGAGGATGGTCGACTGGCTCAGATCCACCCTTGTGGCGGCATAACAAAATGTTCACTGAATTGGGCGAAAAATTAGCGAGTGTCACTTGACAAGGACTGAATAGCAGCAACAACCGTCGAGATCGTTGTCCAGTCACGCGGACTGATGATCTTAGATATAACGCAGAACTCAATGGCTCCTCCTGTACTATGATAGGGCGATATAGCGAGCCGAAAACTCGGGCCGGATGAGCGCTCACTGCGGTCCCGCAGCGCTGTTACGACGCCACGTTACCCTTGATCCGTGGTTGGTAGTGTCGCGTGATGAATGCACGAGTTGGTACCGTTCTAAGATCGACTACACGTGGCTCGATTTTAGCAAGTGTGCGATACCTGAATAGTCTGTAACAGTCCGGCGACCCATGGAAGCCGTTTCGTCCCGTATGCCAAGGCCCCGTTTATCCCTCAGCATGGGAATGACGGCCACCAGTGGTCCGTGTTCGCGATCAGTCTCGGGGAGGTACACACCCTCACTGTAAACTGGCAAGGAGGTGATTTTGCCCAATCTGAGAGCCTAAAGTGGCAGTACAGGTTCCTCACACATAACGAGGTACTTGCCTAACTACGTCCTATGTAGACAGGATAAGAAAACGCAGAGCGCGACCGCCGTGCAGTAATGAGTACTAAGGTAACTGGCCGCTCATATGTTCAGTACTGTCACCGTGTTGGTTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATCGACGCTAAGTCGGCTTCAGACTCTTGCGATGATTCCGATTCGGCCTTTTCCCTCAGTGCTTCTCAGCAGGCAACTTGCGAAAAGCATATCGCGCATTAGTACAACAGCAATTACTACACGACCAAAACGTCGTGGAGAGTCGCTGTACTGCAGCTCAAGGGTGGCCGACCATAGAACATTTAACGATATGCACGATCCGGTCAAATATCACAACAGAATTGTGTGCTAGTAGGGGAAAAGGGGAAGGCCCTTCCTTGGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAACCGACTCATTGCGGAATTTTCAGTTTTACAATGCGGTGACCACTAGCCAACGGCGTCATTGATAATGATACTAACTTCCTTGGGGCGACTCCGGTTTAAAAGTGGCCGGTACGCTTGTTCGACATCATGTGTAGCGTTATTAGGACTGAATTACCGGGCCCCGTTCCGAGATGTTCTTTTTCGGCCCCTGGCGCAGAGGCGCTTGAGCTGCATATACTGGAATATAAGAGGTCACTCGCGAGAACGGTCACGCTACCATGTCGGCAGGATGCAGGATCAGGAATAATGTGGTAGACCTGTGTTCAACGGTGATCTCGGTGTGGATCGGGTGAGCACCAGATCGACTAACTAAGGGATATGCAAGCAGATTCTTCGGACGCCTTTGCCGGTAACACATGGAACACGCCTATGCGCTCCATTACTGGGTGCCTTGTTGAGACGGATAGGTCGGGTTCAATGATTATTAAGGTTTATCAACGTATTACTGCTTGTAACGGCTTGTAAGTGCCAATTGTCATTCGACCCCGGCTGGTCTGACAAGGTTTGTACGCCGATTTGGCATGAGGGGACTAGAGTGGAATAGGATTGTGCACTAAGCTGCGGTCCCGCCTGCGTACCCGCGTATCAAGTGGCTCGGTGGCTGGTTGCGATTACTGAGCTCGTGCATTGCTATCAGTGCGTCCCCTGCAAGAACAGGTATCAAGTGTGGTTCCGTATTGCACGATTGACAATTTCATCGGGTATTCGCTCGTCGGCAAACATTGAAGGCTTCATAGGTTCACAACCGCGTTCCCTGTGATGCGGAATCGCGAGATCTGGATCATCCTTCTAAGACACTCAAAATGCAGACGTCGAGAGACGTATGCGTCCGCGGGAACTATGGCATCTGCCCTTAACATGTGAAGAGACTGCTTTAGCTCGATCTAACCGTAGGCCCTTCATGAAGAGAAGCCATTGTCGGGGGTAGTGACTTTTGGCCGTACGTGATTAAATAACACGGAGTCAAACTCGGAGCGTTCCGTCTCTGATATCGCCAACATCGCAAGCTCCCTACGTACCACCCTGGGTGAACACGACTTTAATGCTTTGAAAATATTGATGGAGACGGCACAAATTTCCGAAAACTCGAAACTTAGTAAATTTACACTGAAAAACCCGGGCGGACAAGTACAAGAGTCCGCGCTCGTAGTGCTCTGTTGAAGCGTTGACCTCTGTCGCTTAAAATCGTAAAGACTTTATACACGAATATTGAGTGAGAAAGAGTCCCCGATCTATCATTACAAATATTCCGTTCTACAATCTGAGGCCAGACAGTTTTGTTCCCTCTCCTTACCTAGTGCCATATCGAGGGACAGAAATTTGACACCTTGCAGTCACACGTTGTTTTGAGATATGCAAACCACGCCCAGTGTCGAGATCCCACATATCTTCATTATAAGCTCGACCACTTGAGACTGCAGCACGAAGGCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGAAATTCCAAGCAATGGCTTCAGCGCTCGGACGCCCCGCCCGTGCCCGGCGTGAACATATGGATGTATGAATTATTGCATGGTCTGTATCTTAATGCGCGCTTGGCAACACATGTGAGAACGGTCTCACGTGCGACTACGTATGATCTATGCAAATGTGCGGTGGCGCCCGGCCTTTTTAGGAGGTTCCTAGACCAGGAGCCTGTGTGGTAAGGGCCGGCAGACGTTTCCGGTACGCTCCGCCAAGAAGGTAACCATGCGGCCCGGTAATGTAACCAGGTCTCGAAAAAATTAGGCGAATCGAAAGGGTTCTATCGGACCGTTAACAATTTACGGTCATTCTAGTATGCATTCAAGGAACCGACTCTCGTCTCACATTTATGTCATCATTATGACTAACGCAAGCTGTTACAACGTGACTACTCACCTGGATCGTCATCACGCGCGATGTGCATGAACTCGCAAAAACGAACCTAATCGAACGGTTATCGGTGACATTTGATTTTGAGTCTGCGGCACGTAAAAGCTCTGGGATGCAGCTCCTATATCAGCCTAGGGGTCGGGCTCTCTGGTTCTGCTCGCTAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGCAGTCCCGTGAGTGAGTAGTATACGCGATCTTGTGTGTCTAAGTTATTGCCACACACGAATGACCAAATACGAGATCTAGACTCGTGTATATGAGACAGGTTGCACAATCAGCCTTTATTCTGAGACAGTGGTGCTGGGGATGGCTTGAGATACATACGCACACAAGCCCAGGGGGATTAATTGCTGCGCAGATAGCCCGCCCAAAGTTGTCCCAGTGACCTTAGAAGGACCCTGTACCTGGCGTTGGGTAAGACACGTCACCCGTCGTAGCCGTGTATAGCCGAGCGTCCTGCAAAAGCGTATCTTTTTGATGAGCGAAATCGCGTCCAAAGACTTCGCTCAATTCAGAAGGCTCGAATTGCCGATCGTCGCAGGGCTGCATTAGGCACGCCAGTTCTTCTAGGTCCCGGGCCGAGAGTGTTCGGCGGTAACTGCCTTTTAGGGGCCGCACACCTCGGCTGCGGCCGGGCGGAAGGCGCTTACTTCTGGATGCGGCTTCAGACGGCTGTAATATGTCTCGGAATACCGCTCAGCATACGAGGAGTCTCCGCTTTCGACAGCCTGGGGCCACGTCGTGTTGAA \ No newline at end of file diff --git a/wk6/pset/dna/sequences/3.txt b/wk6/pset/dna/sequences/3.txt new file mode 100644 index 0000000..2ae4dd1 --- /dev/null +++ b/wk6/pset/dna/sequences/3.txt @@ -0,0 +1 @@ +AGAAAGTGATGAGGGAGATAGTTAGGAAAAGGTTAAATTAAATTAAGAAAAATTATCTATCTATCTATCTATCAAGATAGGGAATAATGGAGAAATAAAGAAAGTGGAAAAAGATCAGATCAGATCTTTGGATTAATGGTGTAATAGTTTGGTGATAAAAGAGGTTAAAAAAGTATTAGAAATAAAAGATAAGGAAATGAATGAATGAGGAAGATTAGATTAATTGAATGTTAAAAGTTAA diff --git a/wk6/pset/dna/sequences/4.txt b/wk6/pset/dna/sequences/4.txt new file mode 100644 index 0000000..91b6b4d --- /dev/null +++ b/wk6/pset/dna/sequences/4.txt @@ -0,0 +1 @@ +GGGGAATATGGTTATTAAGTTAAAGAGAAAGAAAGATGTGGGTGATATTAATGAATGAATGAATGAATGAATGAATGAATGTTATGATAGAAGGATAAAAATTAAATAAAATTTTAGTTAATAGAAAAAGAATATATAGAGATCAGATCTATCTATCTATCTTAAGGAGAGGAAGAGATAAAAAAATATAATTAAGGAA diff --git a/wk6/pset/dna/sequences/5.txt b/wk6/pset/dna/sequences/5.txt new file mode 100644 index 0000000..438bfc0 --- /dev/null +++ b/wk6/pset/dna/sequences/5.txt @@ -0,0 +1 @@ +GCTAAATTTGTTCAGCCAGATGTAGGCTTACAAATCAAGCTGTCCGCTCGGCACGGCCTACACACGTCGTGTAACTACAACAGCTAGTTAATCTGGATATCACCATGACCGAATCATAGATTTCGCCTTAAGGAGCTTTACCATGGCTTGGGATCCAATACTAAGGGCTCGACCTAGGCGAATGAGTTTCAGGTTGGCAATCAGCAACGCTCGCCATCCGGACGACGGCTTACAGTTAGTAGCATAGTACGCGATTTTCGGGAAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCCGTCAACTCATTCACACCGCATCCTTTCCTGCCACTGTAACTAGTCGACTGGGGAACCTCATCATCCATACTCTCCCACATTATGCCTCCCAACCTTGTTAAGCGTGGCATGCTTGGGATTGCATTGATGCTTCTTGGAGAGGACGCTTTCGTTTTGGAGATTACAGGGATCCAATTTTATCATCGGTTCGACTCCCGTAACGACTTAGCAGTAAGGGTGCTAGTTCCTGGTTAGAATCTTAATAAATCACGTCGCTTGGAGCAAGACAAAGATCGTCGTAATGCCAAGTGCACGACCACCTTCAGACTTGCAGGACCCGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTCGATAGCTATGCGGTTCAATACAATCTTAACGCAATGCAGCGATGTGGTTTCGTACACTTAGCATAAAACCCCCCACATTAAATCGATGTACCCGCCCTCTTAGACGCCAATTTCAATGCCGAACCTCCGGCGGGTATCTCTGCACTAGGAGAAGTAGCACGTCGCTGTAGCGAACTCCTATCGTGAGATAATTTGTAGAGCTGCTCTTATAATACAATAGCTCAGATGGATTATTCCATGGACATCCCCGTGCGTTGTTTCGAGGATGGTAGGTGGAAATTTTGCCAGACCTCTAGTCTTAAACATGGTTGACGTTATAGGCGCTATCTCTTGCGTCTGGAAGTGTTAATCCGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACACGCAACTCTGGAGGAGGGCACTGCACTGCAAACTTGCGTAATATCCTTCACCCACACTTGCCTGGCCTCCTTGCTTAAAGCTCTGGCGATGCGATTTTTCGGCCCAGTAGCTGAATAGGTCATGAAATGGGCACCGAACTGGAAAGACCCATATATTCGATACTCACAACTTAATGATAGCGCGATTAAGAGCGACACCAAAAACCAAATTACGTTCACGAACCTTTGAGAGTCAAGGAGACTTAGACCGAATTGAATGATCACTGATGCGCCCGCTGATACTGAGCCTCACCATTAATCGCCGACCAATACGGCGTGTACCGGGCGCGGCCTTGCCGCATAACGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTACACAGCCCCGTCCTCATTGCTAAGTGCACTGGCAACTGGACCTAAAGATTTTTCGAGTATGGCCCTCGAATCAAGCGCCCACCCAGAAACCTACGAGCCAGTAACCCCAGTAAACAAGCATTAGTGCTATATGCTTGCTGCCCACTAGGACCCTTATGGTTCATACCAGGGTGACGTGTCTTGCGGGCCAAGGATGAACCAGAAGCAAGATCCTTAGATGGACGACTGTCTCATTGCTTAAACTCCACATACCAAAGGGCGCGGTAAACGATAGTTTTAGGTAATGTTAGTCGGATGGTTGTCTGCAGCTACCAATACAGCCTGGCACCCAGGGTCTGAACAATAACGCGTGAGAGCAGCTCTCCCGCGTGTGGTGGATTTGCCGTCTATGAAATTGAGGCTCTTGCAACTATTCGCACTCGGAATGCCCTCATATCTGGTGCCTAGCGGCCTTTGCCCCGTGCCGGTAGGACTAAACTCTACGGATCGTTGACGGATCTCGATGTGGAAGATGGTTATGAAAGATAACAACGCGTGTGCTAATTGATTTAGACAAGTATTGCGGCAGTAAAAGATAATCGGCTGCAGAGTTACGAAAGACTTCCATGCATGGATTCCATTCCTTCTAGTATAGGACCCACTCTGAATACACGTCTTGCGGGCCGATCATCTCCACCGCTGCGGAAGAAAGCAATTAAGAATCTATGCTCATTAAGAGTGCGACTATAATGCGGATCTTACAGTGCTAATGATCAGGACGTCGTCCAAGCAGGCTGCATGCCGAATTTAGCTTACGTCAGGATCAGGCGTTATAGCCTGGGAATCGGACTATGAGGACGCCACGACCTCTGGGAGAAAGCTATATACATTGAGGATCGCGCCATCTTTATGAGACTCAAATGAATCTAGATAGGTAGCATTGCGGACTTGAGTTAGCACATCGGTATTGGAAGGTGAGGGTCCTGCCGCTCGTTCTATGTTCGGTTTATAGTATACAAATAGGTCATCCCGAACGTTGAAGTTAAACTCATGACACGTTGTCGTAATGAAACGGGCCTGTTATTAGGGATACAGACAAAAGGCACAAGCTGGCTTGCACATTAAGGCGCACTAGAGATCCTCACAACCGTTGCCCGCACGGAGGTCGTGTCTAACAGACAGTGAACCAGCCGTATTGGGGTGGATGACCTGAGCTTCTTGGGGCCTGTTGTACACCGCGTGTGGTTCAACTGGTACACATACTACGAATATTCGAAATCATTGTACTGTGCTCTTCGGTGCTACTGACTGTGAGCGAATGCATCCCAATCCCAAACAATGCTTGTGGTAGGAGAATTGAAACTCTCGAAGCCTGGCCCAATGTCATCTACTTTTAACATGTCGGGCCAGGAGTTACGGGCATTGCTTACTTACTTTGCCCCCTTACACCACAGCAGCGCGATTCTTGTTGTAGTAGATTTTATACGACTCGCGAATTAAATGGAACTTGTCTGTCCCATATCGATCGTGTCCATCGTAAGATGAGATTGTAGGAGCATTCGGAAGTCTATGCGGCCCAGGGACTACTACGTTAAATCTGGTCAGACGTGGTTTACAAGGCGTCCCGATCTTCTCAGAACATATGGGAAAGCACTACCGTTCCTTCACGCATACAGTTGTTCGTGCCGAACGAGTAAGCTTGCGACCAGCCCACCCGCTAGGGCTATGCAGCGGGTCATGGCTGGCGCCATACTGTGCGGACAACCCACGCTCTGGCAGAAAGCGTCTTGTGTTTTGTAGTAGCTCCAACGGTTAGACCTTCGATATCTATTCAGAGCGCGAGCGACCACTATTAGACGGCATGTAAACAATGTGTATTTGTTCGGCCCAACCGGTATATGGGTAAGACCGCGAAGGGCCTGCGCGAATACCAGCGTCCAAAAATTCCTCACCCGAGATATGCGGTTAGTACCCCTTGGGTAACGGTCCGCTACGGGTAGCGACGCGAGCCGGCCGCATCGGTTGGAGCCGAGTTGTCGGGCAGGCGAGTAACGTGTGCAATTTGATGGGCCCAAGCCTCCGGCACTATCCACCTCATACATCGACAAAAGCACCAAATATGGGGAAAAGCTGAGCGTCGATATGTACATCTACCCAGGAACCGGCCCGAACATTAGGCGGACGTGAATTTCCGACCTAGGTTCGGCTACATTTCTACGATCCAAGCACACGTGAAGGAGGAGGGGTGTTCCGACCGTAAATGAACGAGGTGCGCAGTGACCCGATGGCGTTTAGCGGATAGCCTTCCTATGCCGGCCTATGCTGTATGGTAGTTGGTTGGTGCCTCCAGAGCCACTGCACCCAATCATAGGGTCTACAGCAGCGTACTTATAAAATTGTACGGGTGACCCATATCCATTACGGGTTGCGACCAGTATAGGAGAGTATAACTGCGTGAACTAATGCGTTATGACGCTTCAGAGTTTGCTCGGGCCCGAGTTCTAGGGCTATAATGTGTTAGGGCGCAAGTATGCCAAGCTAAGATGTGGCGTGCACACTAGGAGTTGTGTTCCTCTGCAAGCAGACACGAGCACTCTGGCAGTAGTTTGACCACACCCGGGTATCACTGCTACTCCATTTCGAACAAGCTATTGGAGCGGACAAAATATGCTACTCAAGAGCATTAGTTATAGGTCTACGAGACAGAAGCAGTTACTGAGTCTGAATATTCGATATAAGTAGGCATGGAGGCGGAGCAAAACAACGTCTGCGATCAATCGTGTTGATGACGTATGGCGACTGGAAGGTAAGGACTATGGCCGGACGGAATGATTCATGTTCTGTTCAAAGCTATATTTCGAAGGGGTATATTAGCGGTCCTACACTTGGTTAGCACCCTCCCCCCTCTGGATCCTGCACTAATTCGAGCTGGCCTCCATCGGTATCAGTCCGGAAGCTCCACTCTCTATCGTAGTCCTAATCAACAGGGTGCCAGTTTGCTCACGTGGAAGTTTGAGGCCCTTTGTGCTCCATAGCCAATCACTAACCATGCACGCGCGACCCACTCTACGTCCAGATCGGCTATAATAGTTGCGCCCGGGACTGGCAGAGTAGACATGTAAGCTAGATAGAGCCCCGACATCGGCCAAGAGATCCTACGCTGCTTCCAGATAATGAGAGACATTCTAGCATTAGACATGCAAGTCGGCAGGGACTCCCCTTATCTAGTAATTTCGATGAATTGGTTTTTCGGCTAGCATCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGACCATGCCGACCTCATCATAGAAGGAATGCTCTAAACTTAGAGTGCTACTAGGAAAACTATTAATCAATGATCGTCCTGCTTACATAGCTGGACGGCGAAAGTTCTTATACTGCGGAGGTTGCTGACGTAGAGTGCGCTGGGTACAGCGGATAAGTTGATCAGGGTGGGGATAGGGTGGCTCACCGTTTATACTCATATAGATTCCTGGCGTCGACGCTGTGACAGGGTCGAGATCGAGGGGGAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGCGGAGCGGAGGGAAAATTATCACCAGAGGGTAGGGGCTCGCGACATTCTATTCAATGCATTTCAAGCTACTTACGTATTTCGGCACAGTGACTACTGCCTGCGCGGCAGCCGTAAGGTTTCCCGTCAATAGGTGGCACGTATCATTGATGAAAGTGTCAGCTAATCATTCAGGCCTTA \ No newline at end of file diff --git a/wk6/pset/dna/sequences/6.txt b/wk6/pset/dna/sequences/6.txt new file mode 100644 index 0000000..75bb80e --- /dev/null +++ b/wk6/pset/dna/sequences/6.txt @@ -0,0 +1 @@ +TCTATTCTTTGAGGATACGCTCGGCCTAGGCGGGGCTAATGGAAGCCAGGCTAATCCGATGTTGCGGTGCACCTCGATACCGTTCTAAAATATCACATCAACGCGCTCCAGTTGTGTGCCAAGGCCCGCTGAAGAGCAATGGAGCACCTACCCGGCCTTCTAACGCTGTCTAAAACTCCAAGCGAATTGCAGATTTTGGTTAGGACCCGTTTAATCTGTGGGCTTTGGTACTATGCAACCAATGGAACCGGTCGGACTCTGATCAGTCCCGACTGACAGGTCTCAAGTAGTTTGCTTACACGTTCTGACCCCCGTGCGCACCGTTGGGCGTACAGCGGTTCGGTCTATGGAATCAAGGAAAATCATTCGTATGGGGACGTAGTCACATAACAGCTGCAGGGAACTATGGAGATGACGAGGGGTCGTTTAGTGGAACGTCAAATGTCCTAACTGGTTCTGAGCTGTCTGGAACGTTGCAGTCAACGTCTACGATCTGGATTCTACAGTCTAGGCGTTCCAAGGGGCACCAGTAAGCTAAGTTGTTTAAATATGGCGGGTGTCGAAATGACGTCCAAAATCGCAAATAAGACAGATAGCAGGGGTGCAACTTAGGTATCTAAGGTAACTCTGACATACCTCATACAACTATCGAACAGTGGATTCCTTGTCGTCCTGTTGTAAACAGTTCAAGTCGGTACATGTTAGCGGGTGGTTTGGACGAGTATACAGGACCTGGCCTACACGGAATGTTTTAGATTCTATGTCCGGCGGGGACATCGCGTGCCGCTAGGATATAATTGGATTGTGGGAAGAATTTGGCCGGATTTTTGGCCTAGACTCGCGCTTCAGACCATACCGTGCGATCAGCACGATTGCTGACAAGCGTCGGTATTAAAGCAGGCTCCTTCCCAGCCAAACTAACCCAACGAAGACATCATGTTTCGCCGAAGTATCTTTGGGAGATGGGCGAATTAATCGCTTAGCGTGGCCGACTTGGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGTTTAAGGGACTTATCCGACCAGAGGGGCAGTTACTTGTGGCGGTCACACGCCAGGACGAGTCTGTTCTTGCTGTGCGTAGATTAGGCTTGATCTGTGACTACAGGCGAATAGTAGGTGTGGGAAACAGAGGGGGGAGCAATGTGATCCCGGGGGGAGTGCTTCCTATACCTCGGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGGATTATCCCCACCCAATGATCCGATCGCAAGCCTTAATACCATGGCACACCTCTCAACCTACTGATCTTCCATCCGTTTAACCCAGCACTAAGCTGCTCAGTGGTCACACTATGTTCAAGCTTCCGTGACGTGGGATCCTGGGGTCTTCGCAAGGCTAGTTTTGACCATTATCGACGACCGTCACCCTGTGACTGGTTCCCAACAAGGTGTCAAGTTCTAGCCCGTACCTGCAATCGGGAACCTCCGGTGCTTCATGAACCATGGATATAGGAATTATTGGTCTCCTCTCGCGTAGGTAGCGCGAATACCCCCAAGATGACACACTGTGGTGAACTTTGAGGACTCCCAGAAGGGTGACGGGTTATGTGGTTACGCGAAGTCGGCGTATCCACCGCCTAATTTTAAATTCAGCTCGAGCGACACGCGCGCTTCCTGGAAACGTTAGACGGGAAAAACCCCGCCCGAGAATGCGGGTTCCGCGGCCCACTAGGGGGCCCCCCAAGGATCTGACCGCGTATAAGCAATGCACAGCTGTACCATTTCAAATAGGACAGATAGTACCCCCACCGTGACTCGGCCTCAGATAATGGAATACGACCTGGTGACGGCGGTAGGGGTTCTATCTCAGGTATTCAGAGGGTGCATCCAGGTGATTCGTCACGTCCCGATTTCGACCCCACCACAGGATTTGTGCGATGGTAGTCTTGATGCTGTTTGCAGGCGGCCAAGCATCTAGGAGATGCCTCACTGCGCGAGATGAACCGGCGTTTCACAAGGGGACGCCAGGCCTTGCCGTCTCCATAAACCACGAGAAGGTATCGAACGTCAAACGGATAAATGCCGCGATACCGCTCGTTTCGAAGCGGCACTTCGATGGAAATGAGTAGTATGGCCTCGCCACACGACTACTCATCGGCTTGCGCTGACATCAATCCTGGCTGGCTTGAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGCTCCATAGGAAGGTGCGGGATAGCGGACAGCTAATCGGACAGAAGGGCCAGCTTGCACTCTCCTATAATTAGCAAGCGCCATACAATTGTAATCACGTATAAAATACAGCTACGTAAGTAATAGAGAGGCTCCCGGACTGTCCGGCGTCCCGCCAGTCTCGTACCAGGAGGTGGGATGGTAGGCAAACGAGCCTACTAGAATTGGGCCACCCTGTGAATAATATGCAGAGGCAACTACAGACGTCCGTCACCTGCCTAGAATCGAGTTCATTGACGGTGGGATATGCTCCGTTACCTGACTGTAGTTCGACTTTGTGGTGCGCACATAACGAGTGTCTACGATGCACAAAGTGTGAGCAAATTAGGAGTGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGCCGAGATGTTGGCGGGAAGTGTACGGCTTTGCGTCGTCGAGTGCTACGCAGTGTGCTACACTCCCGCAGCTGAGGCTAGGGCCCGAAACTAGACATTTTTTCTTTTGGCACTTCGTTCCGTATAATGAGTTCCCTCAATTCCCCGTCCGCAAGCCTCAGGATTACAATTAATTATACGGTTAAAGTTGGCTGCCAAGCCCGTTATTGACCGGTACCTGAGTCGAGGGGGGGTTGGGGATAGGCAATTATAGTATTCACTCACAGGACGCTCAGTAATGCCGCCGTTGTACTTCACGTAAGGGCCACAGTTTTTCTACCACAGAGGATGATCTGAGGACAGCGGTGCGTGAAGCCCGCTATTCAGGACACCCTCGAAACCCGTGGTTCACAGACAAAAAATTCGCCGCGGAAGCTGTTGCCCCTATGCCCCGGGTCAGCAAGGAGTCTGGATTTTATTCCAAGACTGCGTCTTTATTTTCTGGTGAGTATGAAATGACTCTGAGAAAATGGTCGAACCACGAGCTAGCTACAGCCACAGTCCGCTCAACTAACTTACCTCTACTCTAACAGTTACACGGCTTCCCGTTTTATGGGAAGAAGCACCTGTTCCTTTCCCAAGCCCCTTATAGCAGAGGTTGGTATTCGGTTGATTTGGAATAGTTAAACAGCGGCTATTTTGTAATCACTTTCCAGTCGGTAAGACATTCGAACCTCGTTTTGACGCTGCTCGCCATCGCGTTCGACTAGGAGTATTCCACTTTTCGGAGAGATGATTACTCATGACGCGGGGAACTCCATGGCTGTCATGCAGGATCTGGGCTAAATAAGATTAGATGTTCAACTGTCGTATACTTACTGCTACCAGCGGTGCTAGGCCCAGGACCCGCCATACCTGGCTATTGATCACTCTACCAGATGTCTCTTGACGAGTTACGAATTGCTGGGTGCTCTTGGAGACGAGTTGAGTCCGTAGTCGTGGCTGGGGAACGGGCGAGTTCGTACGTACCGTTTCAAAGCCCCACGAACCCAACCTCTTAGCCTTAACCCCACATTAGATACCCAAGTTGCATGACGCATTATGCGAGTACGACACTGGTATCGGCTGATCCGTCACTGCTCAAAGTCCAGTGGTTTCCTTATCTCGGGCTGGAAAGTGTAGCTTGTTCCAAACCTTCGAGAGGTTGATCGATGACCGGTTCTCACACACATCTTGCGGAGGGATGCTTGCGATGTGGCTTTACGTCCACCGACGGGCCGACTAGCTGGAAATCACAAACCCCTGCTCCGATAAGGTATTCTCGTTGACTTAGGGTAAACAAAATGCCCGTTACGTCCTAACCGAGTTTCCGGGCCTTCACTACCCGCGAGGGATGTGTAGTGGGGCCATTTACCTAAGCAGATGTACACCGAGTTACGATAGTCACATGGCCATTCAAAGCGTCTCACATAATCGATCGATAGATGATGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCCCGGAGGAAGCTGCGATTGGAATGCGGCTAACTTCGCTCTGCAACATTCTTGGCAGACGGCCCCAATGGCGTAATTTAGGCGTGTGTACCTAAAGTGGTCTACTCCTATGAACCGAATCGCGGGATAAATCGAGTTGGGACTGCTTTGCCTTAATTACATTCACTGATTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGGTCGAGCACGGCTGGCACGTCCGGCTCCATCGCGTCGTAATCCATCCCTATTCGACCAACAAAACCTCAGGGGACGGGATGTGAGTGGGTATCGATCATTATCGAACGCCCATAAGTACTCCACTCATCTGTCTGAAAAGTTTGTCGAGTGCCGCTCTCTGAAGAGTACGATAACTTACTCCAAACACTCTACGCCTAGTGGTCGAAAACACTAAAGGGAAAATACTCACTGACTTACTCTGTCGCTCTACGATTGCCGCGATACCTTAATAAGACACGTATCGGCTGTCGCAGCGATGGATTCCTTAAGCGATACAACTAAGATCAATCGGTGCCGGGCCTACAGCCTGGGCCCTAGCTCCAAAAGTGATAATGGATAGTCGGTTCAAGCGAATTTACACCAGACTGATCCTTTACGGTCATTCCGACCGCCGCATGATACATGCCAAAAGACACTTGTCTTCTTTCCTCTAAAAGACAGACCTTGTTTGCAAGGAGAGCCCAATCGGCACGACCCAAAGGGATTATCAACTGAACTATTATTGCATACTACTAAGCAGACGGACCGTATAGCATCATTGATACCTATTATATTTCCATACACCAACTCCATACGCGATGGGTCGAAACTACAAGCTTCACTTACGTGTACAGCCGCAGGACCCACTCTCTAATCTAGCCAATGACACTACTAATTTGAACATTCCCCAGCGATGAACAGGCACATGAGCGGTCCTCGTACCCACCACGGCCCGCTCAACTGCAAGGGGCCGCTCGGATCAAAGTTTTTCACTAACTCATGTCGAGCAGATCGGCATGCTCAAGATAGTATTTTAGGAGG \ No newline at end of file diff --git a/wk6/pset/dna/sequences/7.txt b/wk6/pset/dna/sequences/7.txt new file mode 100644 index 0000000..de0b11a --- /dev/null +++ b/wk6/pset/dna/sequences/7.txt @@ -0,0 +1 @@ +AATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGGTTAAAGCCAAGTGGAAGTTGACGAGCTACGGCACAGGTACCCTATACATACGGTAAATGAGTCGGAGGTTGTGGGTTTAAAGTAAGTCCCCGCTCAACATTCAGCAGACCCTCGAAGTGGGCCCTAAAATCGTGTTGCTAACGCTCCGGACCTGACCCCGAGCTTGGCTCCTAATTGTGTACTCTCTCCAACCAAGCAGCGTACCAACGCGGCAACCAGAGCGAAGCTGTACACGTCGATCATCGTTACGCCTCTACTCGATAGTCGTAGAAACTTGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTGCGGTTGGTAGCTCTAACTGTCATCGTATTCGCGAATACCTCAGATATAAGCTCCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGTGAATGCACGAGAGTGTTATAGCAGATATCCCCGCTGATCCGGCTGCCGAGGAGGTGGGCATGTGACGTTATGCACTACACAGCTACTACCAAGGTCTTCTGCGGGAAAGGATAGACAAACCGGCAACTCCGCGAGGTCGCGGACTTAGTATTGCGACGGCGTCCTAATCGGCTGGATTTGCGGTTTGTTGGCGTTAGTCCAAAGGTGCCGCTAATGTGGCCATATTTACGATCCACCCTATAGGGCTCCAGGTCGTTTTAAGTCGAGTCGTGTCTAGGGGCCATTCCTGGCCTTGAACGAAAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCGGCCTTAATGCTCAGATTCATATGCTGTGAGGCCGAGGGTGGCGTCATATCTTCGATGATGTTGAACATACGGTCCGGTATTTCGACTTGCCACCTGGTACTGCTTTAAAAGATGATACCATCAACAAAAGGGCACGGCGTGCCTCATGCAGGACGGGACGTTGCCTGCCTACAGCGCTCTACGTAGCAATGTCCGTCTTTCTTCATACACGTATGCTCCTAAAGAAATTGTAGTCTAACAGCTTCCAAACTGTAATCGCCGTTAGGTTCGTCTAAAGTAAAAATGATTGCAAGACGCAATCGAAGGAGCCATCGTTTCGAGGTGACTTCTAATATAACTACCTATGGTCATAGCATGCCCCAACATTGAACGAGGTAAGATCACGGGATCGACTGTCCTGGCGAGGGCCTTACGTTAGTCGTGTAATGCTCCGCGCGTCCCAAATATATGAAAGGCACGACACTCCCCACAATTTAACCCTCCCGCCAAATAAGTACCTAGCGGAGATAAGAATCTGGTCGGTCAGAAAAGGGTCTATGTCCTACAGAGTAGGGCGAAGTCCGCATACCGCAACAGTGCGGTGGCAAACGCTTTAATGACCAGGATCGTGCTAGGCAGTGGAATTTCATGTGGATTGGCCCGCGAATGGACAGGGAGCTATGTCTGAACTCTGTTGACGCTGAACTGTATCCGGATCGTCATGTGAATCGTAGCTATGGGAGTGGTGGTACTGTAAGTCAGGGCTACTTACTGCGGGGTATCTATCTATCTATCTATCTATCCTCACAGTTCATGATTATACGGATGTAATTTGCCGCTGGCTCACGATACGGCTATACAGCGTTGGCTCCTAACGTTGCCACCTACAGTCTGCACTTGGGCACTCGGTATGGTATAAAATATATGACGGCAGACGTTGCGATAAGTAAAAGATCGAACAATCTCGCAGCAAATCTTAAAGCGCATCTAACATCGGGCGTGCGAATGGACCGTTCCGAGGGACACTAGTCGAGCCCCTCTTACAGCTCACAGGTAAATCGATTATCGTACGTAAGTCAAGTCGGCACTGCTTTACGGCAGGTAGTAATGGCTGCGTGCTGCGCAGACCTTCTGCCCCTCAGTTAGTCACGGCCACTAGCCCGGGAAAATATAGTTCGGACAGAAAAATCAGTACCCAGCACCCAACTAAAACAAGTTCTATTCCGAGACGCCTGCGGAGAGCCTCACTCGTTATAACTATGTACGGCGGATGGGGGTAGGGTATAAAGGGCATGCGTCTACACCGATTTCCTGGTTAATGATAATCTAGTTCTTAAAGCACTACTAGGCGCTGCGAATAGGGGTATTGGGCAATAGGCCCTGAATTAACCTTGTTTAGGGTTAGCCTATGCAGCGACCGTAGTACAATAATATCTATAAACGGGTACTCTCCAGACGTATTCATTAACTTCTCAATGAGGAACTATCTACAAAATCAATGAGTGATAACAGCGCATATGAAAAGTATGCAGTTGTTTCAAGCTGTTAACGGCCATTTCCACGAACGTGTTCACAGAGTAGAAGAAACGTAAAGCGTTACTCATCTCCGATACGGTGCGTGCGATGGGGCGTATTGCTTGTAATGTCGAGGGACGGGCATTGAAAAGAGTGCCACAGCATATCGGAGCAATTCACTAGTGAGCGTACCTTGATAAAGCAAAAGGATTACCTATTTTGCACACGTGTGCTAACCCCCAAGACCTGTTGAAACCGCCGAGCATCCGCCAATTTCTAGCACAACATTTCCATCTGCAACTAGCCGTAGAGCACTCAGGAATTTGATCTTAACATGATCGTGGAGGCAAGAAAAAAGGATGCAACAGCACCTTAGAGCACGAGATCATTCCTGGTTAATATTATGCTGTACGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGATCGCCATCATTAAGTACTTATATCTGCATAGAACATTAAGCGAGACGTTTGTGAGATATTCCCCTCTGGGCCCTTAGCTTCGCAGTTCCTCAGCGCCCTAAGATAAACGGGTGTAGCAGAAGAATCGGCGTGCTTTTTACAAGTCCTGCCGGCGATTCAGCATCAATTATAAACGGCCCCTAATAGAAATAGGGCGGCAGGAGTCAATTGGTATCGTTTTGGAGCCATTCACCGCCAAGGGTCAGATAACCCGGCATTCACTGCTGTATTCCCGGATTAACGGATCTCGGATCCAATGGCCCTCTGTGCCGATCTAATACTGCACGCTTAGTGGGCGGGATCAGATGAATGGCACCTCAGCCCCCCGAATTCAGTTGCTGGCCAGACGAGGGCGGGGACTGTTTGGAATTATTTGCTCAGTCCTTTTATCATCCCGATGCTATGACTCAATCCTCTAGATCCTTGGATGTCTCAGGAAATCTCACACATCATAGTCAACAAGAAACGAGACAAACTCGACTTGAGACTTCATCGCCTACAGTGTTTTATTGTAACGGGCACCTCTATATGTCGTCTTGATGGCATCAACAGCGCATGGTGATACATCGCTAGCGGCATTAGGCTTGATTGGTGCTTGCCGGGCGGGAGGCCATTTGGAGAGAGGCAGACTATCGTGGCATGCCGTAGCGCTTTGCATGCAGGTGGCGCGACCGTAAGGAGTGCAAGATGTAGATTGTCACGCTAAAGTTTATCACGTGATACTAGCTGACGTGTCCATAAGGCACGCAACAGCCTGCTCTAGGTTACTGTAGGGCTTGGCGATAGCATAGATAGGCCTGAGGGAGTTCTGGCGTAATAGTTGTTAGATAAAGCTGCCCAAATCCAACAGCTGGATTTCATGTGTGTTTGATAGCGCAATGCACTCATACTCAGTCCTTGCCAGCATGCTGTCACACGATGTACATCGTTAGCCCTAAGAGCCCCGTCGAGTAGCTAGTAAGCCTCATGAATGATACTCGGGGCCTCCCGACATAGACGCAGCTTGAGTGTCGGACGAGTATAAGCCATCCCAATGATTTGCCACTTAGAGAGTAGCGCCGTTTGGGATTGAGTCGAAGAGCGTGGCCTTAGACCACATATGATTTGCTTGCGCCTCCGTATCGCTTGCATTTGAGATGGAGCCTCATTTCTCTACCATCGCCGACTAGCAAGTTACCGATGGACAAGCCTAGCTTGTGTACTTTGAGAGTGGCTTCGTCACCAAAGGGTAGCCATAACCTCAATGGCTGTGATCTCTTACCCCCGGGGTCGGGCGAGATCTGGGCGAGAAGACTGCACGAGCCCTAGAAACTGCAAGTGGCACGGCTTCTTGTCCCATAGGCTATTGAGGGCATTGTTGAGTCGAAGTTTCTCCTAAAAATGTGAACATAGTTTCCCGCTCAGAGATACTCGCTTAAAACTCATACCATGGATGGCTGGAATGGACAAGCGGTATTCGTGCTGTGTAGGGATCCGCGTTGGTCTATTAACCACTGAGCGGATGCGGATTAAAGGGACAGACGATTACACGCCACGGAAGTCCTCGTCTGTGACGGGTCCCTCGCGTCTCCCCCAGAGGACCTTCATTCCCCGGTGGAGCGTCCATACGGTCTAGCTTGTACGCTTCGGGGTCGGGTATCGGACTGACCTATACGACAGACATATCCTAGAGAGGCCTAGATGGACCGGGAGCACGCGAGGGCAAACTCCCTCGCTATCCCACTTCGATTTCCCGGGGAGGGCGGCGTTTTAACACGTAAGGCACGTCTATTAGATGAGCTTATATATATGCGAACTTTGATCCAATTGGCACAGAACGTCAATTAAGAAAAATAATACGGAGATAGTGCCGCAATTGTCCATTTATACGCACCCTCTTTCTAGTATCTAACGTTCTTGGTACGCGGTCCACTAGACCCGACTCATAGCGTTATAATTTCCTGGTATCTATTAAATCGTCGGCCGTCTTTTCCACTAGTAACCTGCTCTTAGGCCGCAGGCACGGGCGTACGATACCCCCCGTACGGTGTAACATCAGTGCGAAGTAAATACGGGGCCAGCGTGTAGACGATAGTCATGTTAGCTGGAAGGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTCTGAGTATGCCGATCCAGGTTTGGCAGCAACGGAAAATATCTTCTACTTGGGCCCCTATAACGAAATGTCTGCCTAACCACCTTTTTTCTGGACCCTCAACATGCCAGTTAACCCCGCGCGGGAAAAGCGTCTGGCGCGGGCGTCGGGATATACTGACCAGTAGAGCACTGATTAAAGTATTTGTGGTTAAAAATTCACAACGTATTCCATGCGGGACACCGACACGCACGTCAGTTGCTCGCAGGTGATGGTAGAGGGGTGGATCGACCGAGGTCGGGTTGGTGGGTAAAGGTTAGCCTGCACCACGCGAATGTGCTCCATTCAATTTTGGGGGTGCGATTCTCCGTTGCGGGATCCAAGAGGAGTTAAGATGGCCTTGTCCAGTTGAAACTTGGCTGTGGCATGGGCGACAAGATAAAAGGGTTATTACTGATCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGCACTGAGGTCTAGTACGTACGATGAGTGAGCATCGTTATTGGAAAAAGTCATGAACCGG \ No newline at end of file diff --git a/wk6/pset/dna/sequences/8.txt b/wk6/pset/dna/sequences/8.txt new file mode 100644 index 0000000..63d198a --- /dev/null +++ b/wk6/pset/dna/sequences/8.txt @@ -0,0 +1 @@ +TGGTTTAGGGCCTATAATTGCAGGACCACTGGCCCTTGTCGAGGTGTACAGGTAGGGAGCTAAGTTCGAAACGCCCCTTGGTCGGGATTACCGCCATTCTAGTAGTCTAACCCCGAACGCGCTCAGGCTTTGAGTTCGCGCAGCATTAAGAAGTCCATGCCGGCACCGAATGTCCCGACGACAGGCAACCAGCACGGATACCCGCCTTGAAGGCGCAATCAGTAGGTCGAGTTACAGAGGCTCCCCCCGAGCTTGTGCTTCCATTGAGTAGGGGCTATAGATATGTAGCACTCAGGTTTAGTAGCGCCCTTTTAACAGCGAGAGCCCGCCTGGTCAGAACCGAACGGCTGATACGCGAGCTGATGGCTAGAGGATGAACACGGTCCTTCTCTTCGCTTCGATCCGGGGTAGTTTTGTAGCGAAGGATAACGCTCTGTGGATTCTCCGAGAATAATCATCAGTACGGTGTGCGTACCCTCTCTTTGATCCACGCCTGGGGCTGGACATAGTCAGGCGCATTTCATCTACTTAACCCCGGTAAGGGCCACGGGCGCGACATCTCCTTACCAGGGTTGTCTTATGCTCGCTTTTCCCAGATGATAAGCATCTCGTTGTAATGAACAGGTACCTAAGAAAACTGAGTTTCGACGACCCGTCGGCTCGTGTTCTTATCTATTGATCTAACCGAGGTGAAGCTCGCCAAAAATTTCGTAATGTAAGAGAGAAATTGAAGGGGTGAATTTTGCACTCTCGTGCATACGTCTTGCTACAATAGCAAGAGCTGTATGCGTGCGACCACTTCACTACCTCTATAGCATGCGATCTCGCAGCCCGGATTGTCGCCTCCTTTGGGCCGCAAAAACGGTATACGGACACACTGCATCTGTGAGCACGCACCAACTCGATGCGCGTAATAGGCATCTGCTCCACCCAGGGGGCAAGGGCACCTGAGGACGATCTGTTCCGAACAGTATATTTGAGCCAATGTTCTATTAGTGAAGGCAAGGTGAGGGCAACTCACACTGGTACCTCGAGGAGTAATCCGATCCATCTAAACTGGCATGCCCGTTCGAGCTCGGGGGGTTCTTGAATTTAGCTGCGTGTACCTCAGGTCTCCTGAAGGTGACACCAAAGTACAAGATAGATAGATAGATAGATAGGTAATATCTGACGTGAATTGCTTACCGCTAGTGAGCGATTTAGGTCACGTCCTCTGAAGATGTACCGTGATCATCGATGAAATGGCTCTGCAGAGCGTTGCTCTTAACTTAGTGGGAGTGTTCCTTTGCAGTCTGATGAAGTCGCTGCATGTTAACTTTGCACTAAGGGCGTTTCCGAACCCTATAGTCATCCTTATTGATTCGCCCTGTCTTACCCAGGATACACTACCGTTCGAGGCTCTTAACGTACCAACGCATGCAGTCAGAAGATGATTCACCATCCAAGCAAATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGGCTTTAAAGCACCGAATGTAGTTGGCCATCGGTCTCGGTCACCAATAAGACGGCCTCGTGGGTCACTCGGTCGATGATCTAGGGTCGGGTGCATAGTGTTTCAGGTCGGCGCTCAGGGTTCTTGTCAGGGAAATCTACGGGTGAGTTGGAAAGCGCCGCCAGCGAGATGCCTGTAGGCGATTAGTGTAGAGAGAGCAACATCGGAAAATTGTCCGTGGGGCGCTACGTAAGTGTTCCCAGTATTCTCGTCCAGAGTAAGTCATGCATACCAGTATCAGGCGTCTGTGTGTTACGTTGCAGTGTATCCCGGTAGCGGGAAGCGTATAGAGCGTAACAGACCTGTCCTACAGCACGCAGGATGTCGACCCTTTCTCAGGCACGATACTTCGTGTAACAGCAGTTCCGGTGTCATCTGTAACTGTTCTGTGTTCCATAGTGAAGATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGGGCGACCCTGGCAATCAGGCGCCTGCTTATATGACAATTTGTCGCAATACGGGTCGCAGATGTATTGTCCGCATGAGTTTACGGTATCCGGAACTGTCACCGCCGATCCAATATGATCGCAAATCGGGGTGACACAATGGACCGCCGTAGATAAACCCTGCGATGCTGCAATAAGGATATGATATCGCGCGCGGGCCGTAAAACCGATCTTGGAAGGCGGGAAGTCTCCGGGAAAAACTCTCTGATAAAGCCTATTACAAGAAGAGCTCGAAGGCAAGATGGGCATGCCCCGTCGACCACACGGGCAAGCTCTGAGAATCGATGTGGTCGCTTAACCAACCCATACGGAGTGAACGAGACCACGCGGGCGGTTCTTGGTACGCATGATTCCTATTGGTTCTGCCGGGCGTGTGCAGGATTGTTCACTCCCCACCCTGTCGCTCACGAACGCGCTGGTTGCTTAAACCGACCGGAAATTCTGTAGCCGCCCCGTAAGTTTAACGCTTTGAAATACTCCACATGTGCGTACCGGGTCTGATCGCTTACGTGGCGCCACTATGTTAGGAGCTCATAGATATCGATGAATCAAATGTCTTTCATCGCTCCTTAAACAACCTGACGTATTCGCAAAATTGCGCGTATTGAGAAGGGAAAGTTAAAGGAACGATAACAATGAGTCTGCTTTCACCGGCTGCATAACGGGATCGCGCGCTATGGGATTTCCTAACTATAATTCGTGTCGATACTCAGACGCGTTGTACAGGTAAGAAGTCGGCGGGACAGTATTTGAGAAGGGGCTCTGCGGCACCAACGCCGAGCTGTATCAGGGGGGTTAATGTGTAGCGGGCATATAACACAATACAGCCCGCGGCGCGTCGTGGTTACCGTAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACACCGGAGCTAGGATCCACGACTACCAGTGGGAAACTGTGAATTGTGCATGGTAATTAAAGGATGACTGGTCAACACCGGTCTCCACGGGCGTTAAACAACCTCGCTCCAGTCAATCTCTAGCGGTGGTTGTGGCAGCTTATTCCTGGAGGTAATACTCTTCCGGGCCCACTAAAAATGTAACGAAGTCGAGGTTGGGTCAGGGGATTGAGTGGGGGCGACTCACTGATTCCACCAGGAATTGTCGTCAATCGCGACGTACTTTGAGCCTTGTATCTTGGCGTTTCTTGTTGGTACGCGGCCGTGTTCGTGAATCACGACGTCGTTCATGATTCATCCGTCCAAGCCTAGACCTAGCGTAAAAACGGTGTCGATCTGTGCTCCAACCGATGGATGGTTTTTACACAAGTGAACTTCGAGGCTGTGGGACAAACAGCACAACTTGTTCACTGCTGACCGTGGTACTAAACCACGCTTGCTTTCAGCCCTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTCAGATGCGGATCAAGGGTTACTCGAGCCGTTCTGAGGTCCTAAAATTTTAGCCCTTGGTGTTAGCTTCGGTTTAAGAACGTAGGTGCGACGCGGGGGTCCTAGAGCTCCGCGATCTGCACTCCCCACCTGGCACCAAAACGAATCCTGCATAACGGCTCTCTGTGCATGGGGGATGGTCGCAACAACGAGCATAGCTGGCATCACTTCGTTTGCTGTGGATTGCTGTTTTATACAGAATACGGTGGTGATCATCAAAGGAAGCATAATCCACATCGGGCACCCCGGGCCATCGTGCGTTCCCTTATAGCCGGCTTGCATGTTGGGGGAGGAGTAAGGCCGGTAACGTCTCGCAGCACTGTCGCGTAACACAGGTACATCTTTATTTCCGGTGCTGTAGAAGTGGTTTTTCGAAGGCGTAACCCAGAACGACTGATATAATAGTCCACTATTCCCTGGTTTAAGACTTCTACAAAGTTTTACGCAAAGTTACATGCACACTCGGCGACGTAAATATTAGCCTTGCTAAATTGCCACGGATATTAATCCCGAGCCAACCTGTTCCCACTAGCGGTCTACGGTCATAGTCCTTTGTGTAGAGCGTCATTGCGGTTGGGGCCCGTCCGCGGAGGTTCCCCTTATGATCTAACCGCGGTGCAGGTTGACTGAATGCCATACACTATAGAGAAGACGTCTAAGTAGAAACGTTCTTTAAAAATCTTGAACTGACGGCCGAGTATTATCAAGAGAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCATGCACAATAAGGTTAGAAGCAGCAAGCATGTATTCTTTGCATAGAGGCGGTAAAGCCGCCTTGCATACCCAGCAGCAGCCGCGAAGGCCTTACTCCAGAGGACAGAACTTCTCACACAGCGTCCGCATACACCGCGGACGTGACAAGGTTAGATAGCTCTAGTTTGCGGCAACCCTCGCATCAGGCCGACTCACCCGCGCTTGCTACCCGGAGGATGGGTCAAGGGATAAACATAGCACGTTAGTTAAGCCTAACGTCAGTTTTTAGAGTTTACATGCACGACTAAGTGCATCGAAATACACGCCGTTGACAGACCAACAGCGTGTCAACTGGGCCTTGAGAATTGTATCATAATAGCCAAATACGAGGCCAAGTAGTCCGACGAGAGGCACGTAGAGACCACTTTCCCTAAACGATCTGTCGCATTACCCTTTGACTCGCACCCTATGCCTTATGTTCCAAGCAGCACCGAAGTTAGATTTAAGGGCGTATCTATCGGTACCTCGGTTGGGCCGGTCCACAGCTCCAGCTGAATTAGTGCTCACCCCGCTTCGAGGTTGAGTAAGGGTCACTTTTAAAAATATGCTTAAGGGTGATTCACATGACAGTAATCGAATAGTGAGATATAAGTAGGTGCGCCCCGCGCACACATCAAAACTGTGCAGACTGAAACTGAATGCTGGAGGCTGAGGAAAATGAAGATCAGAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGAGAAGAGTGAATGAATAGATCTGCCGCTGAATCCCCGCGTGAGGTTTTTGCGAC \ No newline at end of file diff --git a/wk6/pset/dna/sequences/9.txt b/wk6/pset/dna/sequences/9.txt new file mode 100644 index 0000000..5403728 --- /dev/null +++ b/wk6/pset/dna/sequences/9.txt @@ -0,0 +1 @@ +AGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCAGATCTTCCGTGATTCCTGGATACAGTAGGGCTTTCCAAAAGTTTTCCCCCATAGGGTTTGATACGACCGGAGCAGCACAGGCTCTTGAGGGGATCTTCCCTGTGGCCGCTAATTCACGTGCCGGAAGAGATACGGAGTACCGCTGTAGTTGGGAACGCTTTAACCATTGATAGCGTCCACGTCACTACACAACGTATCACAGTCGCATCTGGTCTCTCCTGCGGATTTACCTTACTGCCATTTTACCGCTGCACACTGTCGTTTTTAATAACACAAGCAACAGTCTCGGATCTATGATTCACGTGAAAACAGAAACATCTGAAATCACTGTCTTATCTAGGCCCTCCAAGCCTCGTCATGTAGAGTTTATCAGTTTATAGATCGGTTCATGGCGGCTATTAGTATAGAGCGTGCCATAATAACGGATCGATCCTAAGCATCTGCCCGTCTATCGAAACGACCGCCAACTGGCCGCAGCGAACCGTAGGAGACCCTGTACGGGCCTTGGCAATTTGGCTTTAAACCTATATATCGTTTCGGACACACAAGAAACTGGTAGGTCAAACGTGCGTCCGCTCACAGAATGGGTAAGCTACCAATGTGCATCTTATGGTGAGACCGCGCCGAGGGCAAAGGCTCAACAGGCTGATAGGGTTGTGCTTAGCGCGCTTGGTCATCAATTATGATGGATTCGATCATATAGTGTTCGTGCACACTGCGCCCTGTCAGACCTTCAGCCGAGACGCGCGCATCAACCATTCGTTTTCTCATGAGACTAGTACCCATTGGATTAAGCTGTGAGGTAACAGTCAGACATGGAATCCCGCAGGAACGTGCAGAAAATCCTTGCCCCATAACGATTCGTCACCGCGTTATAAACTGACTGCAATAAGAATTCTAGTCGGTCGTTTGGTCAGCTGTTGCACGTTAAACAACACTTGGAACTCAGACGAGGCCATACTTAATTCGCGGGATAACGGTTTCTGGCATTGACCGTCAGTTGTGGACGGCCGGGGCTAGTCGGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTGTCGACTGTAGCCTAGCTAGGTCGAACACAAAAGGCGGCCTATTAAGAAGAAAAGATTGGAGCTGTCACACTTGAATTTATGGGTTTATCTCGTGTAGTGTAGCGTGAAAAACAGGCGCACTTGGACGCCCTAATGTTTTGCCTATCGTATAGTTCGGCACCCTTATGGACAGCCTAAGGTCCCACGAGCGGATCGCTGCCGGAACCATCAACAGGGCGGTATCGTTAAAGTTGAGAAAAAGGGCTGGCCACAGGAAGGGTCAACTTTCTCTATGGTGATGTGGGACCTCCGAGCTACCGCACAATAGTACTACGGGGGCAATGTCTTGGGTGCGTCTGGCTCTCCAACAATCATAATTTTGCCGTACCTGGTGAATGAGGTTGGGGACATAGTTACGGGTCGCCGGGCCCGCATGCAACAGAGGCTGGTGGAACCGGTGTTAATTGGCAAGAATCCACATTTTTAAGAATGTGGTCCTGACTAGATGGGGCCGCGGAGATTTCTGCCCGCGGATTCAGATTATATTATTGTATTTGATGCCGGAAAACTTCGTCACGACCGGTCCAGCTCGCGCGCTCTATGATTAGCTCTTATACGCAGGCTACGAGCTGCCGTTACAACATTTGCGCACGCAAAGCCAACCTGTCTGGCGACAAGATCAAGGGGCACGTCCACAGTTCCCACAATGGCAATTGTACTATAGGGGTACTCGTCGGATAGGAATTGTTAGGGGGCATTATCTTACGCCTGTGCGATATAGTCGCGGCGGGCTGTCTATCAATCCTGATCGACCGCTAGGTCAATGGGGGGATTACGGACAAACCCCGAGGCTCAACGTGGGACAACGGACTCCTCATGAGGGGCGAACGATTAAGAAGCTCGTCCCTATAAAAGACAGCACTTTCCTATCTTTTAGATAGAAAGGTAAGTGTGATGATCAGACCATTAGGGGCGACATGATTGCCTAAGGTTTCTCCTCATCTTCCATGCCAATCGACCAGGACCGATAGCCATATCTTATTGCTTGTAAGGATTGAGGCGCTTACGAGGACCCAATGGGAGAAATGAATGAATGAATGAATGAATGAATGAATGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGCGTATATCGCAACTCGATCCTAGCTCGCAGCCGTAAGCCGGCAGTAACGCACCTGTTTCTCTCCTGACACCTCTCCACGTCGGTATCTCGACCTAGGTCAATAGGCCCCGAGAAAATAGGGCCAACGCATGGATCCCTCGTAAAATTCTCTAAGCCCCCTGCGTCTCCATCAGGTCATCTAAGGATAAATCGGAACCAGTGTTCCTGATTCCTGGGGATCAGTCTCACAAGTCCCCTGTGCAGCAAATCTTAAGCAGCCTCTCCCAGGAAACTAGAGGGTGGAGGGTGTCCAGTGGCGCAACTAGGGAACCCTCGTGTCGACTGCTTTTTTGTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCTATACTGTACGGTGCCCGAAGATCCAAAAGATTCTCGATTTCAAAAATAGTTTCACTATTGACCTCAGCTACCGAACGTGTCACGCGAATAAGAACTACGACTGATTGTTGGCCGAGTTCCTGTTGGTCAAATTGACACGCGTAAGAAAGTCATTATTGAAGATCGTAACTTTGCATTAGAGATATCATAAACTGAATACGATCGGAGCGCTCCTCTGATAACCGACCACGAGTTTTGAAAGTTAATGGCTCCACCCTTCCCCTACACATGAATCTCGGCCTACGTAAGGCGTACTGTAAGCCAAGTCATCCCTAGTCTGTTCATTCCGGGATGAGAGATAGCATACGAGGACTCCTAGGCACCGTACTAGAGATCCGTGACTACACTTGGTGAGGTGCAAACAGCCTCCCGCGGTACCCAGCCATGTGCGTAGAAGGCCTTCGGTGATTTAAACGTGGTTCAGTGGGGGACAACCCGCCGTTCTCATAGGTCGTCCTCCTCGTCCTCTGTTGGTAAGCTGTCACCAGAAGCTCTCAAAGGAGTTCCGCGTGGAACTGTACCTTACGCCCAAGTTGACAAGACGAGTCTCCATCCGCCCAATCGAGGGCGGATGCGGTGTTCATCTTAAACTACCGCCCCCGCCCTTCGTTTGAAAAAAGGCAGGCATCGGAAGCACTACGAGCCCCATTCACGAACCACACCCGTGCTAGCTGTGACGCTTACGTCGCTAAAGAGGGGTAGTGAGTAGGGTACACCTTCAGCACTCGGACCATCCCAAACGAAGGACACAGGTTTTAGCGCCGGTCACAGGCCTCGTATGATGAATGACAAGTCATATAATAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATTGTTCTTCGAGGCTTCTTCGCCAGGATTGGCGGCGTGGTGACCAGCGTGCATATCCCTCAGTTTACAGTCCATCCGGTCATACTAGAAAATCCGGGTGGACTTGACATGTGCTCAGTTTAAGGGCCATCCGGCCTCTCAATCGTTCAGGGCGATCGACTCAGCAGATAACCCGTCTTGAAGTCCTAGTTCCCGCTCCCGCGGTAATAGTGCTTGATCACTAGCGATTCAGGAAACGAGCCGTCCGTGGAAAAGCCGAACGGGACGCCCCCTCACCGAATGCGGTCTGTCCTGAGAGGACCTGACAAAACTACCAGGTGGCGTGTCTAGGTTGGCGAACTAGAATTTTATAGAACCACCGCTCTCCCCCGGTTGACACACCAACATTCCCGTACTCAGATGGAACAGCAGGGTGCAAAAGGTTAGCGTCGCTCCCCTTGTCCACTGTCCGCGGAAGGTACCTCTAACAGGAACCGGGGCCCTTTCTGAGCGAAGAACCAGGAGGTTGAACAAAAACAACGAAAACAGGTGCAGGCCACTGTAAGGTTTGTTTCCAAATCCGTGCCAAAGCAGTACCGGGAGTTTGTGACGAGTAACTGACAACAGTCCCTTCCTACGATACTGAGGTCAGAATAGGCGCTCGTGGAAATGAATCGCTAGCGGATTCACACCAAGCGTATGCCGCAGTCGACCTCTATTAGTAGGTGTCCCAGCGGAGCTGCCCAGCAAGCGAGTGTCAGTCCTCGTATGTCCTAGCAGTTGCAGCAGCATGCCTACGCTTGCGAAACCACAACCTTCATCCCAGAGGAATCCCTTGGACAGTGGTGGTTGACTAGAACGCGAATCCTATATGCTGGAGATCTCCCTTACAGACTAAATTCACTTGTCACTTCGAAATCGGATGCGAGCACGCTCTCAACATAGAAGGTTCGTGACTTTAGCCATGCTAGATCCGATCCCCTTGGTATCCCAGACCATAAAGTAAACCAAAGGACACCTCCACAAGTCGAGTCGATGACATGCAGTAAGCATGAATGATTCCTTTATCAGGAGCAGCATAACTATGAACAACCAGGTAGCGTTGTAACAGATATAGGTCGACACACGGCTTCCTTCATTGTCGGGATCGATGAGGAAGCGAAGTTAACCGCTGTGCTGGTCATCGCTCCAAGTGTTTTCTAATATTCCCCCGTATTATCACAGCTAACGCCCGCGGGATCGTCCGTAAGTTTTAAACAATCTGATAGCCAATAAACCAATAGCCACGTTATGGTACTGGAAGTAGTCGATAAGACTGGCGAAACAAACTTCCCGTCAGGGCCGGGCATGTACAGCATGGGACTGAGTCATTATCGTGTCGAGGGCAGCTGTACGTCTTTAGCAAGGGTAAGGTGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATACGGTGATCTGGTCAGGTCTTGGGGGTTGGAAGCATCTTGCAGGTATAAGCAAAAAGGGATATTCTTATGTATTCCGTATTCGTACACAATGAATGGACACTGGGACACTCGCGAGCAAAATACGCCCTGACGACAACACAAATGTCATGGGATTATATGTCTTCGATTAGAAGGTAAGAAATCGCACAGCGGCAACGAACGTAATCTAGAAGTTCTAAGATGGCCTAAAAAACGCCCGTCTCCCCTAAGGTCTAGCAACAACGGTTGATTGCAAGGGGCGTCGGAACAGCCCGGCTTCCTTATAGAAGTATCGAGGTTTCGCCAAAGTACATACTGTTGCCCGCTAAGGTTCGCCTAACAGTCAGAGTAGGTGAGGCGATCGGCCGTGCGTGTCTTTAGTTTTCGACAAGCGTGCTCGGTGTATCGCGT \ No newline at end of file -- cgit v1.2.3